Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_G18
(614 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13642-6|AAG00038.1| 175|Caenorhabditis elegans Hypothetical pr... 72 3e-13
U55374-7|AAP82641.1| 286|Caenorhabditis elegans Uncoordinated p... 32 0.37
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 32 0.37
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 32 0.37
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 32 0.37
Z78540-4|CAB01734.2| 624|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z77652-11|CAI70405.1| 310|Caenorhabditis elegans Hypothetical p... 30 1.1
AC025721-9|AAK29904.3| 639|Caenorhabditis elegans Hypothetical ... 29 3.5
Z48241-4|CAA88284.1| 468|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z48241-3|CAC42265.1| 490|Caenorhabditis elegans Hypothetical pr... 28 4.6
U64600-1|AAK39203.1| 500|Caenorhabditis elegans Hypothetical pr... 28 4.6
AF241847-1|AAF71523.1| 468|Caenorhabditis elegans LAG-3B protein. 28 4.6
AF241846-1|AAF71522.1| 490|Caenorhabditis elegans LAG-3A protein. 28 4.6
>U13642-6|AAG00038.1| 175|Caenorhabditis elegans Hypothetical
protein ZC395.10 protein.
Length = 175
Score = 72.1 bits (169), Expect = 3e-13
Identities = 40/116 (34%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
Frame = +2
Query: 68 PPVLWAQRKEDVFLTFSV-ETKDPTIKIXKDSXYFTGEGAPDNTLHEVTIALYDTVLPEK 244
P VLWAQR+ V+LT V E K +K + +F G D +E T+ +D + P
Sbjct: 5 PTVLWAQRESLVYLTIEVDEAKIEELKGEGNKLHFQGSSKTDK--YEATLEFFDEIDPAS 62
Query: 245 SVFVNXGXCVEMILRKEKTDGPFWPTLTKDKKKPHYLKIDFNKWNDXDDEXEXNNS 412
V I ++KT +WP L ++K K H+LK+DF KW D D++ E ++
Sbjct: 63 VKHTGSSTRVVEITVQKKTPA-WWPRLLQNKGKVHWLKVDFGKWKDEDEDDEAEDA 117
>U55374-7|AAP82641.1| 286|Caenorhabditis elegans Uncoordinated
protein 2, isoform d protein.
Length = 286
Score = 31.9 bits (69), Expect = 0.37
Identities = 18/71 (25%), Positives = 27/71 (38%)
Frame = -1
Query: 506 SQFPSHQTKVFXPSAQDHQLHQSSGAFARNHMNYFXQXHHXHHSIC*NQFSGNAAFSCLL 327
S P+H + PS+ + L+ S G +Y H HH Q +S
Sbjct: 145 STMPTHYESAYQPSSYNQHLNDSYGLGTGYQRDYHTSHSHSHHPTS-QQQQHQPMYSTSP 203
Query: 326 LASARMDHLFF 294
L S R H ++
Sbjct: 204 LISPRSSHSYY 214
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 31.9 bits (69), Expect = 0.37
Identities = 18/71 (25%), Positives = 27/71 (38%)
Frame = -1
Query: 506 SQFPSHQTKVFXPSAQDHQLHQSSGAFARNHMNYFXQXHHXHHSIC*NQFSGNAAFSCLL 327
S P+H + PS+ + L+ S G +Y H HH Q +S
Sbjct: 1785 STMPTHYESAYQPSSYNQHLNDSYGLGTGYQRDYHTSHSHSHHPTS-QQQQHQPMYSTSP 1843
Query: 326 LASARMDHLFF 294
L S R H ++
Sbjct: 1844 LISPRSSHSYY 1854
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 31.9 bits (69), Expect = 0.37
Identities = 18/71 (25%), Positives = 27/71 (38%)
Frame = -1
Query: 506 SQFPSHQTKVFXPSAQDHQLHQSSGAFARNHMNYFXQXHHXHHSIC*NQFSGNAAFSCLL 327
S P+H + PS+ + L+ S G +Y H HH Q +S
Sbjct: 1886 STMPTHYESAYQPSSYNQHLNDSYGLGTGYQRDYHTSHSHSHHPTS-QQQQHQPMYSTSP 1944
Query: 326 LASARMDHLFF 294
L S R H ++
Sbjct: 1945 LISPRSSHSYY 1955
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 31.9 bits (69), Expect = 0.37
Identities = 18/71 (25%), Positives = 27/71 (38%)
Frame = -1
Query: 506 SQFPSHQTKVFXPSAQDHQLHQSSGAFARNHMNYFXQXHHXHHSIC*NQFSGNAAFSCLL 327
S P+H + PS+ + L+ S G +Y H HH Q +S
Sbjct: 1886 STMPTHYESAYQPSSYNQHLNDSYGLGTGYQRDYHTSHSHSHHPTS-QQQQHQPMYSTSP 1944
Query: 326 LASARMDHLFF 294
L S R H ++
Sbjct: 1945 LISPRSSHSYY 1955
>Z78540-4|CAB01734.2| 624|Caenorhabditis elegans Hypothetical
protein C33G3.6 protein.
Length = 624
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 515 HHQSQFPSHQTKVFXPSAQDHQLHQSSGAFARNHMNYFXQXHHXHHS 375
HHQ SH S + +Q Q +G++ RN+ Y HH ++
Sbjct: 390 HHQHHQQSHDQNSTISSVEYNQYQQKAGSYGRNYHPY--NNHHQQYN 434
>Z77652-11|CAI70405.1| 310|Caenorhabditis elegans Hypothetical
protein C06B3.13 protein.
Length = 310
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 167 FTGEGAPDNTLHEVTIALYDTVLPEKSVFVNXGXCVEMILRKEKTDGP 310
+T E PDN + I Y + P +F+N G + + R++K + P
Sbjct: 154 YTSECEPDNHIVTYIIDNYSRLFPVLCLFLNIGIILYLSKRRKKMENP 201
>AC025721-9|AAK29904.3| 639|Caenorhabditis elegans Hypothetical
protein Y48G8AL.5 protein.
Length = 639
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 302 DGPFWPTLTKDKKKPH-YLKIDFNKWNDXDDEXEXNNSYDFEQM 430
+GP W K +P +LK+D +WND + + S+ ++ +
Sbjct: 430 NGPAWKKKKMFKDEPFTFLKLDDERWNDIRNHYGVDESFLYQNL 473
>Z48241-4|CAA88284.1| 468|Caenorhabditis elegans Hypothetical
protein C32A3.1b protein.
Length = 468
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = -1
Query: 527 QVNXHHQSQFPSHQTKVFXPSAQDHQLHQSSGAFARNHM 411
Q HQ Q HQ P+ Q+H A+ +HM
Sbjct: 420 QAQQQHQQQAQHHQMGYGIPNGYPQQMHMHPPAYGAHHM 458
>Z48241-3|CAC42265.1| 490|Caenorhabditis elegans Hypothetical
protein C32A3.1a protein.
Length = 490
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = -1
Query: 527 QVNXHHQSQFPSHQTKVFXPSAQDHQLHQSSGAFARNHM 411
Q HQ Q HQ P+ Q+H A+ +HM
Sbjct: 442 QAQQQHQQQAQHHQMGYGIPNGYPQQMHMHPPAYGAHHM 480
>U64600-1|AAK39203.1| 500|Caenorhabditis elegans Hypothetical
protein C33D12.2 protein.
Length = 500
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 164 YFTGEGAPDNTLHEVTIALYDTVLPEKSVFV 256
+F+G+ + N HE+TI V+P K+V V
Sbjct: 18 FFSGKSSEKNVCHEITIKHNVVVVPNKNVRV 48
>AF241847-1|AAF71523.1| 468|Caenorhabditis elegans LAG-3B protein.
Length = 468
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = -1
Query: 527 QVNXHHQSQFPSHQTKVFXPSAQDHQLHQSSGAFARNHM 411
Q HQ Q HQ P+ Q+H A+ +HM
Sbjct: 420 QAQQQHQQQAQHHQMGYGIPNGYPQQMHMHPPAYGAHHM 458
>AF241846-1|AAF71522.1| 490|Caenorhabditis elegans LAG-3A protein.
Length = 490
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = -1
Query: 527 QVNXHHQSQFPSHQTKVFXPSAQDHQLHQSSGAFARNHM 411
Q HQ Q HQ P+ Q+H A+ +HM
Sbjct: 442 QAQQQHQQQAQHHQMGYGIPNGYPQQMHMHPPAYGAHHM 480
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,387,605
Number of Sequences: 27780
Number of extensions: 235629
Number of successful extensions: 629
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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