Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_G14
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    31   0.14 
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    25   7.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   7.0  

>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -1

Query: 548 ITFHYTKYLIV*RLRCIYYCILFCARRYFETVTKRSQIFILPHNI 414
           + F Y   L    +RC+ Y +L C   +F T+  RS   ILP +I
Sbjct: 496 VNFRYRLDLRPLTIRCVPYILLACLILFFMTLFSRSSSTILPPSI 540


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = -2

Query: 487 YYFARVDISRR*PNVHKYLFYHTISSGKTLKTLNRQKKSFYYLVLSLKKNNSMC 326
           Y   + D +R   N  +  + +   SG+  +++N      Y+L+  L +N S C
Sbjct: 140 YQLYQRDSNRENGNGKREFWLYGHPSGRPFRSVNDFLHHLYWLISDLTRNESTC 193


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
 Frame = -3

Query: 618  NFEHXFNKMY-IK*LLFYSHRRYP--NYISL--HEIFDCVKTSLYILLHIILRA*IFRDG 454
            N E+ FN+++      ++S + +   NYI +   E+ D V+ ++  L ++I  +  F+DG
Sbjct: 1456 NLENQFNEVHSFWKNSYFSFKSFKGRNYIVVGCQELIDAVEKNMDSL-NLIKTSRHFKDG 1514

Query: 453  DQTFTNIYSTTQYLV 409
            D   T++ S  + +V
Sbjct: 1515 DMNITDLQSKMKIIV 1529


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,064,656
Number of Sequences: 5004
Number of extensions: 38201
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)