Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_G13
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    44   1e-05
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    38   0.001
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    37   0.002
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    36   0.006
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    35   0.010
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    30   0.21 
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    27   2.6  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   6.0  

>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = +3

Query: 378 FVRXAIDSPPKTPFILGFECAGEIEQVGENV-TNFKVGDQVVALPEYRAWAELVSVPAXY 554
           ++R  + + P  P+I G E AG +  VG+ V  +FKVGD+VV L  + A+A+  +VP   
Sbjct: 47  YLRTGLYTAP-LPYIPGKEAAGVVAAVGDKVEADFKVGDRVVYLTPFGAYAQYTNVPTTL 105

Query: 555 VYALPE 572
           V  + E
Sbjct: 106 VSKVSE 111


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 18/31 (58%), Positives = 21/31 (67%)
 Frame = +3

Query: 414 PFILGFECAGEIEQVGENVTNFKVGDQVVAL 506
           P ILG E AG +E VG  VT  +VGD V+AL
Sbjct: 67  PVILGHEGAGIVESVGPQVTTVQVGDPVIAL 97


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +3

Query: 393 IDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVVAL 506
           +D     P +LG E AG +E +GE V N + GD V+ L
Sbjct: 57  VDPEGAFPIVLGHEGAGIVESIGEGVINVRPGDHVILL 94


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 35.5 bits (78), Expect = 0.006
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +3

Query: 408 KTPFILGFECAGEIEQVGENVTNFKVGDQVVALP 509
           K P ILG E AG + +VG+ V++ K GD V   P
Sbjct: 60  KKPMILGHESAGVVVEVGKGVSSLKPGDPVAVEP 93


>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 34.7 bits (76), Expect = 0.010
 Identities = 18/48 (37%), Positives = 32/48 (66%)
 Frame = +2

Query: 257 LTGFGGLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGRHRL 400
           ++GF  LK  +  + P+  +  GEVL+++KA  LN++DLI+ +G + L
Sbjct: 11  ISGFDQLKPEEY-EVPQK-LNPGEVLVKLKAASLNYRDLIITKGLYPL 56



 Score = 33.9 bits (74), Expect = 0.017
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +3

Query: 402 PPKTPFILGFECAGEIEQVGENVTNFKVGDQVV 500
           P + P + G + AG IE+VGE+V  F+ GD VV
Sbjct: 57  PLQLPVVPGSDGAGIIEKVGEDVEGFEKGDSVV 89


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 420 ILGFECAGEIEQVGENVTNFKVGDQVV 500
           ILG E  G + + G+ V N ++GD+VV
Sbjct: 94  ILGHESCGIVAEKGDEVNNLEIGDRVV 120


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +1

Query: 445 KSSKLAKMSPILRWAIKWWL 504
           +SS L K+ P+LR+ I++WL
Sbjct: 154 RSSHLLKVRPLLRFLIEFWL 173


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 444 HQRIRSPR*KESSVESRWRP*R--TIKSWKFRPQAFTRIRTSPS 319
           H   ++P     S   RWR  R  + K++ FRP   TR+ ++PS
Sbjct: 73  HPPSKNPTSSSLSTRKRWRQKRLWSFKNFPFRPP--TRLTSTPS 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,002,795
Number of Sequences: 5004
Number of extensions: 35770
Number of successful extensions: 101
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)