Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_G13
         (572 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)            62   2e-10
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   47   1e-05
SB_27978| Best HMM Match : HycH (HMM E-Value=0.12)                     38   0.008
SB_43405| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.22 
SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)            33   0.22 
SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.29 
SB_50200| Best HMM Match : RVT_1 (HMM E-Value=0.044)                   31   0.67 
SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)                   29   3.6  
SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)               29   3.6  
SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_51866| Best HMM Match : Pkinase (HMM E-Value=0)                     28   4.7  
SB_59749| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_43329| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)
          Length = 562

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 25/56 (44%), Positives = 34/56 (60%)
 Frame = +3

Query: 405 PKTPFILGFECAGEIEQVGENVTNFKVGDQVVALPEYRAWAELVSVPAXYVYALPE 572
           PK P++ GFEC+G +E++GE VT   VG +V+ L  Y  W E   V A   Y +PE
Sbjct: 93  PKPPYVCGFECSGVVEELGEEVTGIDVGARVICLAPYGMWTEYACVDAKMCYVMPE 148



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 26/62 (41%), Positives = 39/62 (62%)
 Frame = +2

Query: 242 MRAVVLTGFGGLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGRHRLSTEDSFH 421
           MR+VVLTG GG   +K+ K   P   +G+V+++V ACG+ F DL+ RQG   L+ +  + 
Sbjct: 39  MRSVVLTGHGGNNKIKVEKYARPKPMQGQVVVKVHACGVTFADLLQRQGHFPLAPKPPYV 98

Query: 422 LG 427
            G
Sbjct: 99  CG 100


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 20/53 (37%), Positives = 33/53 (62%)
 Frame = +3

Query: 414 PFILGFECAGEIEQVGENVTNFKVGDQVVALPEYRAWAELVSVPAXYVYALPE 572
           P   GFE +G I+  GENVT F++G +V     + +++E + VP   ++ALP+
Sbjct: 71  PITPGFEFSGVIQWKGENVTEFEIGQEVFGASLFGSYSECIRVPKNQLFALPK 123


>SB_27978| Best HMM Match : HycH (HMM E-Value=0.12)
          Length = 316

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 25/65 (38%), Positives = 36/65 (55%)
 Frame = +2

Query: 242 MRAVVLTGFGGLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGRHRLSTEDSFH 421
           M+AV+ T  GG +++ I   P P + E EVLIRV    LN  D + R+G +     +S  
Sbjct: 28  MKAVLFTP-GGPESMYIGDAPRPKLKETEVLIRVHFTALNRADTLQRKGSYPPPPGESEI 86

Query: 422 LGLRM 436
           LGL +
Sbjct: 87  LGLEV 91



 Score = 35.9 bits (79), Expect = 0.023
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +3

Query: 402 PPKTPFILGFECAGEIEQVGENVT-NFKVGDQVVALPEYRAWAELVSVPAXYVYALPE 572
           PP    ILG E +G +E++G      ++ GD+V+AL     +AE  +V   +V  +P+
Sbjct: 80  PPGESEILGLEVSGIVEELGSACNLGWRKGDKVMALVPGGGYAEFAAVQESHVMPIPK 137


>SB_43405| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 549

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 405 PKTPFILGFECAGEIEQVGENVTNFKVGDQVVAL 506
           P+ PF  G   AG I  +G+ VT  KVGD V  L
Sbjct: 315 PELPFTPGNYGAGIIHAIGDEVTKHKVGDHVYTL 348


>SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)
          Length = 303

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +3

Query: 414 PFILGFECAGEIEQVGENVTNFKVGDQVVALP 509
           P +LG E +G I  VGE V++ K GD+V   P
Sbjct: 52  PMVLGHESSGVICAVGEGVSDLKEGDRVAIEP 83


>SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 420 ILGFECAGEIEQVGENVTNFKVGDQVVALP 509
           +LG E +G +  VG +V N  +GD+VV  P
Sbjct: 104 VLGHEFSGVVSDVGSDVKNVSIGDRVVVNP 133


>SB_50200| Best HMM Match : RVT_1 (HMM E-Value=0.044)
          Length = 527

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = +2

Query: 269 GGLKTVKILKKPE--PTVGEGEVLIRVKACGLN 361
           GGLK    LK+    P V EG V++++KACGL+
Sbjct: 301 GGLKGEYELKETFECPQVDEGSVVVKIKACGLD 333


>SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 348

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 420 ILGFECAGEIEQVGENVTNFKVGDQVVALP 509
           ILG +  G ++++G +V +  VGD+VV  P
Sbjct: 56  ILGHQFVGIVKEIGADVQHVSVGDRVVINP 85


>SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 622

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 327 SPSPTVGSGFLSILTVLRPPKPVSTTARI 241
           +P PTV S     +T + PP PV+TT  +
Sbjct: 543 TPKPTVASRPSPAVTTVTPPSPVATTTAV 571


>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
          Length = 791

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 316 W*GRGPDSRESLRPKLPRFDSSSGXPSTLHRRLLSSWASN 435
           W  R  D+R+S++  +  F S+ G PS  HR  L++   N
Sbjct: 60  WLDRLVDARDSIQEHVTSFRSTPGNPSKRHRDRLNAELDN 99


>SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)
          Length = 1110

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +1

Query: 322  GRGPDSRESLRPKLPRFDS--SSGXPSTLHRRLLSSWASNALVKSSKLAKMSPIL 480
            GRG D    +R +LP  DS  S G  S      LSS  S+++  S K     P++
Sbjct: 1055 GRGRDKGRQMRTRLPSIDSSRSMGRSSDEDHEDLSSEPSSSIENSRKEVYKLPLI 1109


>SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 378 FVRXAIDSPPKTPFILGFECAGEIEQVGENVTNFK 482
           +    +D     P ILG E  G +E VGE VT  K
Sbjct: 46  YTLSGVDPEGLFPCILGHEGGGIVESVGEGVTKVK 80


>SB_51866| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 948

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 348 AFTRIRTSPSPTVGSGFLSILTVLRPPKPVSTT 250
           A TR+  + +PT+GS F     +L P   V+TT
Sbjct: 700 ATTRVTFNGTPTIGSSFTVASQLLTPDNTVATT 732


>SB_59749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1091

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 570 RAARTHXAPVQIPARPKRGTREEPPLDRP-P*NW*HFRQLARFHQRIRSPR 421
           + ART  A V   AR  R T  EPP  RP P      R+LA++++  R+ +
Sbjct: 808 KPARTPVAAVPAAARDARITSPEPPATRPHPGRVEAGRRLAKWNRTNRAKK 858


>SB_43329| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 378 TIKSWKFRPQAFTRIRTSPSPT 313
           TIKSW ++PQ  TR   +P  T
Sbjct: 83  TIKSWCYKPQTVTRSSKTPVKT 104


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,809,346
Number of Sequences: 59808
Number of extensions: 297079
Number of successful extensions: 721
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)