Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_G13
         (572 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   3.8  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    21   6.6  
AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor pro...    21   6.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 549 APVQIPARPKRGTREEPPLDRPP 481
           +P Q P  P+RG+   P    PP
Sbjct: 26  SPHQSPQAPQRGSPPNPSQGPPP 48


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 251 RRAFPWAVGSHPFSPR 204
           RR FP   G  PF+P+
Sbjct: 31  RRPFPTFPGQGPFNPK 46


>AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor
           protein.
          Length = 33

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 251 RRAFPWAVGSHPFSPR 204
           RR FP   G  PF+P+
Sbjct: 17  RRPFPTFPGQGPFNPK 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,940
Number of Sequences: 438
Number of extensions: 2628
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)