Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_G11
(625 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52... 33 0.14
02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665 33 0.24
05_03_0415 - 13661745-13664240,13664376-13664401,13665018-136650... 32 0.32
04_01_0180 + 2034021-2034023,2034741-2035088 31 0.98
01_07_0376 - 43156672-43156902,43157505-43157741,43157934-431582... 29 4.0
01_07_0084 + 40976976-40977164,40978174-40978201,40978445-409785... 29 4.0
06_01_0008 + 141405-142421 27 9.2
03_06_0040 + 31240164-31241102,31241280-31241897 27 9.2
03_05_0512 + 25069175-25070533,25072177-25072226,25072308-25072401 27 9.2
03_04_0034 + 16679624-16679940,16679980-16680199,16680319-166806... 27 9.2
02_02_0331 + 9017291-9019084,9019205-9019402,9020014-9020184,902... 27 9.2
>02_01_0075 -
522554-522616,522742-522748,523033-523136,523237-523368,
525209-525401,525978-526330,526693-526791,526864-526935,
527062-527213,527338-527386,527755-527885,528067-528307,
528392-528565,528656-528797,529236-529282,529370-529450,
530170-530271,530345-530440,531437-531444,531575-531616,
531830-531894,534761-534853,534888-534959,535303-535509,
536318-537226,537503-538158
Length = 1429
Score = 33.5 bits (73), Expect = 0.14
Identities = 21/69 (30%), Positives = 35/69 (50%)
Frame = +2
Query: 287 AALGDANGKAXEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESXKL 466
AA+ DA G+ +A+E ++ E+L A+PDVE L E L+ A ++ ++ L
Sbjct: 514 AAIYDAMGRVEDAIEILEHVLKVREEKLGTANPDVEDEKLRLAELLKEAGRSRNRKQKSL 573
Query: 467 AXXVSSNVQ 493
+N Q
Sbjct: 574 ENLFVTNSQ 582
>02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665
Length = 727
Score = 32.7 bits (71), Expect = 0.24
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +2
Query: 299 DANGKAXEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESXKLAXXV 478
DA G+ EA+E + E+L A+PDV+ L E L+ A + +++ L +
Sbjct: 637 DAMGRLDEAIEILEHVVGMREEKLGTANPDVDDEKRRLAELLKEAGRGRSRKAKSLENLL 696
Query: 479 SSNVQXTNEKLA 514
+N +++A
Sbjct: 697 ETNPYTVTKRVA 708
>05_03_0415 -
13661745-13664240,13664376-13664401,13665018-13665035,
13665914-13666181,13666531-13666598,13667102-13667243
Length = 1005
Score = 32.3 bits (70), Expect = 0.32
Identities = 21/53 (39%), Positives = 28/53 (52%)
Frame = -3
Query: 359 PCARCSASTVPKPXWPCRSRLRALPWRLLAKALSCCSTDSEPSFQALLKSCAS 201
P R SA T+ WP L A+ +R L AL+CC + S PS L++C S
Sbjct: 99 PGLRASAPTL---RWPFPRLLDAIAFRPLPCALACCGS-SAPSVVRHLRACGS 147
>04_01_0180 + 2034021-2034023,2034741-2035088
Length = 116
Score = 30.7 bits (66), Expect = 0.98
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +2
Query: 320 EALEQSRQNIERTAEELRKAHPDVEKNATALREK---LQAAVQN 442
EALE+ QN+ R EE +K H +++K L K L AA +N
Sbjct: 52 EALERQVQNLTRYKEEKQKQHANLQKEFAELERKYRDLDAAHRN 95
>01_07_0376 -
43156672-43156902,43157505-43157741,43157934-43158295,
43158370-43158670
Length = 376
Score = 28.7 bits (61), Expect = 4.0
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = +2
Query: 281 SRAALGDANGKAXEALEQSRQN---IERTAEELRKAHPDVEKNATALREKLQAAVQNTVQ 451
SRA LG +A++ S ++ IE EELR+ HPD + L+ + V+ +Q
Sbjct: 164 SRAVLGRLERGVIKAVQLSAEHNASIESVREELRQFHPD-DPRIVVLKHNVW-RVKGLIQ 221
Query: 452 ESXKLAXXVSSNVQXTNEKL 511
S L + + E L
Sbjct: 222 VSRTLGDAYLKSTEFNREPL 241
>01_07_0084 + 40976976-40977164,40978174-40978201,40978445-40978575,
40978941-40979434,40979516-40979609,40979686-40979779,
40980342-40980444,40980550-40980601,40980716-40980756,
40980881-40980960,40981490-40981936,40982378-40982554,
40983205-40983803,40983886-40985040
Length = 1227
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 216 QQGLEGRLRVRAATAQRLRQESPGQRSETRTARPXRLWN 332
+Q G+ TA+ RQ S GQ+S + A P R W+
Sbjct: 1132 RQWSSGQQSYNTVTAEPSRQWSSGQQSYSNPAEPSRQWS 1170
>06_01_0008 + 141405-142421
Length = 338
Score = 27.5 bits (58), Expect = 9.2
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = -3
Query: 371 GAPRPCARCSASTVPKPXWPCR---SRLR-ALPWRLLAKALSCCSTDSEPSFQ 225
G+ RP A SAS P P P R R R +LPW L A A + S P+ Q
Sbjct: 259 GSHRPAAPASASASPSPAPPPRLAERRFRISLPWPLRA-AFGGQAESSNPTNQ 310
>03_06_0040 + 31240164-31241102,31241280-31241897
Length = 518
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 79 ALAQGAMVRRDAPDFFKDIEHHTKEFHKTLEQQFNSLTKSKDAQDFSKA--WKD 234
A+AQ RR+APD D+ +E L+ + N L + + D+ A W D
Sbjct: 190 AIAQSKTTRREAPDADTDMSMEAQELRHVLD-ELNPLIGAANLWDYLPALRWFD 242
>03_05_0512 + 25069175-25070533,25072177-25072226,25072308-25072401
Length = 500
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 296 GDANGKAXEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQ 427
GD G+ A+ +R E A LR+A ++ A ALR +++
Sbjct: 47 GDGEGEGEGAVVLARVEAEEEAAALREAVAAAQETAAALRSEVE 90
>03_04_0034 +
16679624-16679940,16679980-16680199,16680319-16680624,
16680703-16681044,16681066-16681257,16681533-16681684,
16681803-16681974,16682017-16682338,16682414-16682862
Length = 823
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 287 AALGDANGKAXEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNT 445
AA+G G A A SR ++ R +L H D ++K + +NT
Sbjct: 141 AAVG-GGGAAVSARPASRASVRRNVSDLAAEHSDANDGIPVRKDKANWSARNT 192
>02_02_0331 +
9017291-9019084,9019205-9019402,9020014-9020184,
9020292-9020435,9020552-9020764,9020859-9021929,
9022365-9022391
Length = 1205
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +2
Query: 329 EQSRQNIERTAEELR-KAHPDVEKNATALREKLQAAVQNTVQESXKLAXXVSSNVQXT 499
+QS ERT E + KAH ++ K E +QAA +QE VQ T
Sbjct: 420 KQSDPKKERTVSEAKEKAHDEMNKGRAYGNETVQAASVKQMQEEQFPMSLADQKVQAT 477
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,444,359
Number of Sequences: 37544
Number of extensions: 213447
Number of successful extensions: 948
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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