Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_G08
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12470.1 68414.m01441 Pep3/Vps18/deep orange family protein c...    40   0.001
At4g30700.1 68417.m04351 pentatricopeptide (PPR) repeat-containi...    34   0.071
At1g12110.1 68414.m01402 nitrate/chlorate transporter (NRT1.1) (...    30   1.2  
At4g26640.2 68417.m03839 WRKY family transcription factor contai...    29   2.7  
At3g18200.1 68416.m02315 nodulin MtN21 family protein similar to...    29   3.5  
At4g26640.1 68417.m03838 WRKY family transcription factor contai...    28   4.7  
At3g54030.1 68416.m05974 protein kinase family protein contains ...    28   4.7  
At2g38790.1 68415.m04762 expressed protein                             28   6.2  
At1g24260.2 68414.m03059 MADS-box protein (AGL9) strongly simila...    28   6.2  
At1g24260.1 68414.m03058 MADS-box protein (AGL9) strongly simila...    28   6.2  

>At1g12470.1 68414.m01441 Pep3/Vps18/deep orange family protein
           contains Pfam profile PF05131: Pep3/Vps18/deep orange
           family; similar to Vacuolar protein sorting 18 (hVPS18)
           (SP:Q9P253) {Homo sapiens}
          Length = 994

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 29/117 (24%), Positives = 51/117 (43%)
 Frame = +3

Query: 300 LITHAAVSSDNLXVAMANGKLFXMDIRNPDSEQEIHYSKYCQPTSKLSGLFLDPLGCHLL 479
           +IT  A  +D + +  + G +   D     S  +I  +        +  +F+DP G H +
Sbjct: 23  MITCMAAGNDVIVLGTSKGWIIRYDF-GVGSSNDIDLAVGRTGEQSIHKVFVDPGGSHCI 81

Query: 480 MSFSSKTKDGCPELAYIHQKSSKLKFVSKIPNYEITEVGWNFENTSNNMTGPILLGT 650
              ++ T  G  E  Y H K  K + +S++    +  V WN +  +   T  I+LGT
Sbjct: 82  ---ATVTGVGGAETFYTHAKWLKPRVLSRLKGLLVNAVAWNRQQITEVSTKEIILGT 135


>At4g30700.1 68417.m04351 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 792

 Score = 34.3 bits (75), Expect = 0.071
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
 Frame = +3

Query: 93  LLFAVVGVVIRTVFSKMTSILDQYKQAAQASYRTKPPAEPMISSGYINMQLEXNVPMFTK 272
           L  A V   + TV+SK+  I    K   ++  ++ P    MIS    N   E  + +F +
Sbjct: 351 LSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFRE 410

Query: 273 -QKMNLNPSDLITHAAVSSDNLXVAMANGKLFXMDIRNPDSEQEIHYS 413
            QK   +P+ +     +S+     A++ GK     +R+ D E  I+ S
Sbjct: 411 MQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVS 458


>At1g12110.1 68414.m01402 nitrate/chlorate transporter (NRT1.1)
           (CHL1) identical to nitrate/chlorate transporter
           SP:Q05085 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00854 POT family
          Length = 590

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -3

Query: 286 RFIFCFVNIGTLXSSCILMYPEDIMGSAGGF 194
           RF FC +N+G+L +  +L+Y +D +G   G+
Sbjct: 192 RFFFC-INVGSLLAVTVLVYVQDDVGRKWGY 221


>At4g26640.2 68417.m03839 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 557

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/68 (27%), Positives = 27/68 (39%)
 Frame = +3

Query: 393 EQEIHYSKYCQPTSKLSGLFLDPLGCHLLMSFSSKTKDGCPELAYIHQKSSKLKFVSKIP 572
           E  +  S      S  +G    P   H+  S SS T  G  +  +  QKSS+ +F     
Sbjct: 67  ESPVFISNIKPEPSPTTGSLFKPRPVHISASSSSYTGRGFHQNTFTEQKSSEFEFRPPAS 126

Query: 573 NYEITEVG 596
           N    E+G
Sbjct: 127 NMVYAELG 134


>At3g18200.1 68416.m02315 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 360

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 328 ITXWWLWRMGNCLXWT*GILILSKKFTTQNIVSQPLN*AVCFW 456
           +T  WL+ MG+CL W  G ++L      Q      L    CF+
Sbjct: 181 LTLGWLYLMGHCLSWA-GWMVLQAPVLKQYPAKLTLTSFTCFF 222


>At4g26640.1 68417.m03838 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 485

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +3

Query: 432 SKLSGLFLDPLGCHLLMSFSSKTKDGCPELAYIHQKSSKLKFVSKIPNYEITEVG 596
           S  +G    P   H+  S SS T  G  +  +  QKSS+ +F     N    E+G
Sbjct: 8   SPTTGSLFKPRPVHISASSSSYTGRGFHQNTFTEQKSSEFEFRPPASNMVYAELG 62


>At3g54030.1 68416.m05974 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 490

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 19  FYXQSN*LKFKMYLNKV*CLSQSYNYCSLSSV*LY 123
           F+ ++N +K+ M L    CL+Q+  YCS     LY
Sbjct: 142 FHWENNPMKWAMRLRVALCLAQALEYCSNKGRALY 176


>At2g38790.1 68415.m04762 expressed protein 
          Length = 204

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 162 YKQAAQASYRTKPPAEPMISSGYINMQLEXNVPMFTKQKMNLNPSDL 302
           + +   A  + K  + P   S  +   L    P FT + +NL PSDL
Sbjct: 123 FNKIGDAVSQIKQDSRPPTKSMTMRRSLSAGSPRFTSKGVNLGPSDL 169


>At1g24260.2 68414.m03059 MADS-box protein (AGL9) strongly similar
           to GB:O22456, MADS-box protein, Location of EST
           gb|H37053
          Length = 251

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = +3

Query: 321 SSDNLXVAMANGKLFXMDIRNPDSEQEIHYSKYCQPTSKLSGLFLDPLGCHLLM 482
           ++  L + +A+G    + + NP+ E+  HY ++     + S  F  PL C  ++
Sbjct: 167 TNKTLRLRLADGYQMPLQL-NPNQEEVDHYGRHHHQQQQHSQAFFQPLECEPIL 219


>At1g24260.1 68414.m03058 MADS-box protein (AGL9) strongly similar
           to GB:O22456, MADS-box protein, Location of EST
           gb|H37053
          Length = 250

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = +3

Query: 321 SSDNLXVAMANGKLFXMDIRNPDSEQEIHYSKYCQPTSKLSGLFLDPLGCHLLM 482
           ++  L + +A+G    + + NP+ E+  HY ++     + S  F  PL C  ++
Sbjct: 166 TNKTLRLRLADGYQMPLQL-NPNQEEVDHYGRHHHQQQQHSQAFFQPLECEPIL 218


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,897,241
Number of Sequences: 28952
Number of extensions: 245803
Number of successful extensions: 473
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)