Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_G07
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 184 1e-47
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 61 1e-10
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 39 5e-04
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 36 0.005
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 36 0.005
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 35 0.012
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 34 0.021
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 31 0.11
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 31 0.15
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 31 0.19
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 30 0.34
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 30 0.34
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 29 0.44
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.59
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.77
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 28 1.0
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 28 1.0
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 28 1.0
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 27 1.8
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr... 27 2.4
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 27 3.1
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 27 3.1
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 4.1
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 26 4.1
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 7.2
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 25 9.5
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 184 bits (448), Expect = 1e-47
Identities = 78/113 (69%), Positives = 86/113 (76%)
Frame = +3
Query: 99 MASVMDVDEEXVEMASSXXGKGXKKRFEVKKWNAVXLWAWDIVVDNCAICRNHIMDLCIE 278
M M +D++ VE+ RFE+KKWNAV LW WDIVVDNCAICRNHIMDLCIE
Sbjct: 1 MEDEMQIDKKEVEIEQKPP------RFEIKKWNAVALWQWDIVVDNCAICRNHIMDLCIE 54
Query: 279 CQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLHNXXWEFQKYGH 437
CQAN SA ++ECTVAWG CNHAFHFHCISRWL TR VCPL N WEFQ+YGH
Sbjct: 55 CQANTDSAAAQECTVAWGTCNHAFHFHCISRWLNTRNVCPLDNREWEFQRYGH 107
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 61.3 bits (142), Expect = 1e-10
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +3
Query: 174 RFEVKKWNAVXLWAWDIVVDN-CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF 350
+ ++ +++A+ W WD D+ C ICR C +C ++ + C + WG C H F
Sbjct: 2 KVKILRYHAIANWTWDTPKDDVCGICRVPFDGCCPQC-----TSPGDNCPIVWGKCKHIF 56
Query: 351 HFHCISRWLKT 383
H HCI WL T
Sbjct: 57 HAHCIQNWLAT 67
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 39.1 bits (87), Expect = 5e-04
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 336 CNHAFHFHCISRWLKTRQVCPL 401
C H HFHC+ WL+ +Q CP+
Sbjct: 328 CGHILHFHCLRNWLERQQTCPI 349
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 35.9 bits (79), Expect = 0.005
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +3
Query: 336 CNHAFHFHCISRWLKTRQVCPL 401
C+H +H C+ +W++TR +CP+
Sbjct: 647 CHHLYHRQCLLQWMETRSICPV 668
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 35.9 bits (79), Expect = 0.005
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 297 SATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 401
S+T + +A C H FH HC+ W + CPL
Sbjct: 43 SSTLDGLRIAKIPCGHYFHNHCLESWCRVANTCPL 77
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 34.7 bits (76), Expect = 0.012
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 270 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPL 401
C+ C +N ++EC CNH FH CI +WL + Q CPL
Sbjct: 525 CLVCLSN--FELNDECR-RLKQCNHFFHRECIDQWLTSSQNSCPL 566
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 33.9 bits (74), Expect = 0.021
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 264 DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV-CPLHNXXWEFQKY 431
D CI C A+ A + + C H FH CI W+ T + CPL N ++ KY
Sbjct: 203 DFCIICYADYAF----DDILRVLPCEHVFHTQCIDTWMTTMKASCPLCNE--DYYKY 253
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 31.5 bits (68), Expect = 0.11
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 273 IECQANQASATSEECTVAWGVCNHAFHFHCISRWL-KTRQVCPLHN 407
+EC S T + VA C H FH CI++W+ R CP N
Sbjct: 319 VECVICLESFTKGDKVVALP-CKHEFHRPCIAKWIVDYRHACPTCN 363
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 31.1 bits (67), Expect = 0.15
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +3
Query: 243 ICRNHIMDL-CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 401
+ + +MDL C C + ++ T C H F +C+ +WL+ CPL
Sbjct: 97 LSNDQLMDLTCPICYDDMNENDEKQATKM--PCGHIFGKNCLQKWLENHCTCPL 148
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 30.7 bits (66), Expect = 0.19
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = +3
Query: 330 GVCNHAFHFHCISRWLKTRQV--CPLHNXXWEF 422
G C H FH C+ +W K+ CPL + F
Sbjct: 1577 GTCRHKFHASCLYKWFKSSNSSRCPLCRSSFTF 1609
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.9 bits (64), Expect = 0.34
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Frame = +3
Query: 303 TSEECTVAW--GVCNHAFHFHCISRWLK 380
T T W G C H FH CI +W K
Sbjct: 203 TINPSTSIWSCGTCYHVFHLSCIRKWCK 230
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 29.9 bits (64), Expect = 0.34
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = +3
Query: 336 CNHAFHFHCISRWLKT-RQVCPL 401
C H FH CI +WL T CPL
Sbjct: 785 CKHFFHQACIDQWLTTGNNSCPL 807
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 29.5 bits (63), Expect = 0.44
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +3
Query: 336 CNHAFHFHCISRWLKTRQVCPL 401
C H FH +CI WL+ C +
Sbjct: 414 CKHYFHENCIKPWLRVNGTCAI 435
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 29.1 bits (62), Expect = 0.59
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +3
Query: 336 CNHAFHFHCISRWLKTRQVCP 398
C H + + C+ WLK + CP
Sbjct: 100 CGHTYCYECLLNWLKESKSCP 120
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 0.77
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 270 CIECQANQASATSEECTVAWGVCNHAFHFHCISRW 374
C+ C S+ + T+ VC H FH C+ +W
Sbjct: 208 CVVCLERMDSSITGLITI---VCQHTFHCPCLQKW 239
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 28.3 bits (60), Expect = 1.0
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +3
Query: 336 CNHAFHFHCISRWLKTRQVCPL 401
C H F + CI+ W + CPL
Sbjct: 271 CGHIFCWSCINGWTSKKSECPL 292
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 425 KVWSLNVIXKSCILHRSLTSSEHXELTCQYL 517
+VW L + + CI R S E+ E TC L
Sbjct: 25 EVWPLVTVPRQCICLRWCISKEYHEFTCSSL 55
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 28.3 bits (60), Expect = 1.0
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = +3
Query: 336 CNHAFHFHCISRWLKTRQVCPLHNXXWE 419
C H H S W T +CP+ N E
Sbjct: 874 CGHGAHASHASEWFSTHTICPVPNCDCE 901
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +3
Query: 333 VCNHAFHFHCISRWLKTRQ-VCPL 401
+C H F + CI + ++TRQ CP+
Sbjct: 642 LCGHGFCYQCIQKRIETRQRRCPI 665
>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 454
Score = 27.1 bits (57), Expect = 2.4
Identities = 9/51 (17%), Positives = 23/51 (45%)
Frame = +3
Query: 42 TQPNNSWLFFNKTGXFNLKMASVMDVDEEXVEMASSXXGKGXKKRFEVKKW 194
T P+ S FN+ F + + + + M ++ G ++++++ W
Sbjct: 320 THPSRSSEMFNEIVNFQKEFVETLKIPARILNMPTAELGSSASQKYDIEAW 370
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 26.6 bits (56), Expect = 3.1
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = +3
Query: 336 CNHAFHFHCISRWLKTRQVCPL 401
C H + C+ WLK CP+
Sbjct: 1107 CGHLYCSFCLEAWLKHSSSCPM 1128
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +3
Query: 336 CNHAFHFHCISRW-LKTRQVCPL 401
C+H FH CI + LK +CPL
Sbjct: 517 CHHIFHPACIDPYLLKNSDLCPL 539
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Frame = +3
Query: 336 CNH-AFHFHCISRWLKTRQVCPL 401
C H F + CI RW+ CP+
Sbjct: 37 CGHDQFDYSCICRWMDQSLTCPI 59
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = +1
Query: 283 KQIKPQPLVKNAQLLGVFVIMHSISTVFPVG*RLDKFVHYTIXNGSSKSMVIKCHLXELH 462
++I P P+++ + + +V H I + ++D + NG+ KS ++K + +LH
Sbjct: 511 EKISP-PILQMSDVNFEYVPGHPILKHVDIDVQMDSRIGVVGPNGAGKSTMLKLLIEQLH 569
Query: 463 P 465
P
Sbjct: 570 P 570
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +1
Query: 217 GILLSTTVLFAEIT*WICVSNAKQIKPQPLVKNAQLLGVFVIMHSISTVFPVG 375
G + + +L A I WI V K +PL+K +L +F I++ TVF G
Sbjct: 534 GAVATLLMLLATIFEWIHVPR-KFPGSRPLLKRFLILILFFILNVAPTVFVFG 585
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2
Query: 416 GVPKVWSLNVIXKSCILHRSLTS 484
G ++W+ N + C+LH S S
Sbjct: 449 GTVRIWNFNTGEQHCVLHNSRNS 471
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,568,561
Number of Sequences: 5004
Number of extensions: 51097
Number of successful extensions: 123
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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