Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_G05
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    30   0.33 
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    29   0.76 
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.1  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    25   9.4  

>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
 Frame = +3

Query: 456 FPNILNQARQEDAAANMLLFTTLIKLNC-----SPDLRFFLCSVYAPVCTILDSAIPPW 617
           F N+       DAA NM   TT+   NC     SPD +F L +V +P   + D++I  W
Sbjct: 329 FGNLQGSIDIFDAANNMKKITTVEAANCTYCEFSPDSQFLLTAVTSPRLRV-DNSIKIW 386


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 456 FPNILNQARQEDAAANMLLFTTLIKL-NCSPDLRFFLCSVYAPVCTILDSAI 608
           F  I  +      +  +LL TTLIKL N  P+L   +  V+    TI++  +
Sbjct: 512 FSTIYRKLNVSSPSTRVLLLTTLIKLANLQPELNDRIAKVFQEYSTIINPEV 563


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +3

Query: 456 FPNILNQARQEDAAANMLLFTTLIKLNCSPDLRFFLCSVYAPVCTILDSAIPPWSS 623
           F N L+   + D+    +L   L++L+    +     S+   + T++D AIP W S
Sbjct: 192 FINYLDTEHKRDSLPTAVLCHLLLRLSTYQQI-----SIIKRLITLIDKAIPSWKS 242


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1142

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/58 (20%), Positives = 31/58 (53%)
 Frame = +3

Query: 126  KSVIIC*YQIRDILNEINIYM*RGSKYHNFNKMTLYEMFCDE*HLCGKLYMINMAKFW 299
            +S++I  ++  D+LN + I+  +   Y   +++   +   +E  + GK+  + +AK +
Sbjct: 842  QSLLISFFEANDLLNLLWIFEAQNGNYGRASEILFRDCEPEENRIIGKISQLALAKLY 899


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,516,002
Number of Sequences: 5004
Number of extensions: 47872
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)