Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_G05
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06330.1 68416.m00729 zinc finger (C3HC4-type RING finger) fa...    29   3.5  
At1g13420.1 68414.m01566 sulfotransferase family protein similar...    28   4.7  
At4g02740.1 68417.m00374 F-box family protein contains Pfam PF00...    27   8.1  

>At3g06330.1 68416.m00729 zinc finger (C3HC4-type RING finger)
           family protein contains InterPro Entry IPR001841
           Zn-finger, RING ; contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 426

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 268 NST*SIWQNFGNIMLLYSVCYVFLR*QKVLXRLFIKAIVYL 390
           + T S WQ F  ++L+ +VCY F   +++L R   K  +Y+
Sbjct: 297 SQTVSAWQEFVVLVLISTVCYFFFL-EQLLIRDLNKQAIYI 336


>At1g13420.1 68414.m01566 sulfotransferase family protein similar to
           steroid sulfotransferase 1 GI:3420004 from (Brassica
           napus); contains Pfam profile PF00685: Sulfotransferase
           domain
          Length = 331

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +3

Query: 126 KSVIIC*YQIRDILNEINIYM*RGSKYHNFNKMTLYEMFCDE*HLCGKLYMINMAKFWK 302
           K V +C   ++D+L  +  +    S  +N +   L+E  C   +LCG L+  N+  +W+
Sbjct: 161 KIVYVC-RNVKDVLVSLWCFENSMSGENNLSLEALFESLCSGVNLCGPLWE-NVLGYWR 217


>At4g02740.1 68417.m00374 F-box family protein contains Pfam
           PF00646: F-box domain; similar to F-box protein FBL2
           (GI:6063090) [Homo sapiens]
          Length = 645

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +2

Query: 479 TTRRCSRKHASVYNSH 526
           +TRRC RK ASV+NS+
Sbjct: 79  STRRCFRKRASVHNSN 94


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,531,854
Number of Sequences: 28952
Number of extensions: 226314
Number of successful extensions: 392
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)