Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_G03
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...   101   7e-23
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...    98   8e-22
SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyc...    45   1e-05
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    33   0.047
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    28   1.3  
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc...    27   2.3  
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    27   3.1  
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ...    25   7.2  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    25   9.5  
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.5  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    25   9.5  

>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score =  101 bits (243), Expect = 7e-23
 Identities = 49/107 (45%), Positives = 67/107 (62%), Gaps = 5/107 (4%)
 Frame = +3

Query: 96  MGAYLSEPVTEKVSSDEANDKLECGASSMQGWRVNQEDAHNTILDFDVNT-----SLFAV 260
           MG  LSEPVTEK S + +N+ +  G SSMQGWR++ EDAH+ IL  + +        FAV
Sbjct: 1   MGQTLSEPVTEKHSVNGSNEFVLYGLSSMQGWRISMEDAHSAILSMECSAVKDPVDFFAV 60

Query: 261 YDGHGGAEVATYCSQNLPNYIKNTDAYKSGDYTKALEDAFLGFDATI 401
           YDGHGG +VA +C  NLP  ++    ++ GD+  AL+ +FL  D  I
Sbjct: 61  YDGHGGDKVAKWCGSNLPQILEKNPDFQKGDFVNALKSSFLNADKAI 107


>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score = 98.3 bits (234), Expect = 8e-22
 Identities = 51/105 (48%), Positives = 66/105 (62%), Gaps = 6/105 (5%)
 Frame = +3

Query: 96  MGAYLSEPVTEKVSSDEANDKLECGASSMQGWRVNQEDAHNTILDF-DVN-----TSLFA 257
           MG  LSEPV +K SS   +  L  G S MQGWR++ EDAH  +L+F D N     TS F 
Sbjct: 1   MGQTLSEPVLDKHSSSGGDRWLHFGVSHMQGWRISMEDAHCALLNFTDSNSSNPPTSFFG 60

Query: 258 VYDGHGGAEVATYCSQNLPNYIKNTDAYKSGDYTKALEDAFLGFD 392
           V+DGHGG  VA YC Q+LP+ IK+  ++  G+Y +AL+  FL  D
Sbjct: 61  VFDGHGGDRVAKYCRQHLPDIIKSQPSFWKGNYDEALKSGFLAAD 105


>SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 347

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +3

Query: 183 QGWRVNQEDAHNTILDFDVNTS--LFAVYDGHGGAEVATYCSQNL 311
           Q WR + ED H  + DF  N      AVYDGH G + + YC +NL
Sbjct: 80  QRWRRSMEDTHICLYDFGGNQDDGFVAVYDGHAGIQASDYCQKNL 124


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 32.7 bits (71), Expect = 0.047
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 252 FAVYDGHGGAEVATYCSQNLPNYIKNTD 335
           + ++DGHGG E + + S NL   I+N D
Sbjct: 88  YGLFDGHGGTECSEFLSTNLGKIIENQD 115


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 108 LSEPVTEKVSSDEANDKLECGASSMQGWR-VNQEDAHNTILDFDVNTSLFAVYD 266
           L + +   + S  ++      AS+ Q    V+Q +A++ I D D +TS+F++ D
Sbjct: 31  LDQNLLANLESSTSSSTRSSPASNQQNLEIVSQSEAYHKISDLDDSTSIFSISD 84


>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 48  LTYKYLFIV*CELHSTMGAYLSEPVTEKVSSDEANDKLEC 167
           L YK   I+  +  +TMGAY++  VT+K++  +  D + C
Sbjct: 30  LRYKDGVILAADSRTTMGAYIANRVTDKLT--QLTDNIWC 67


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = +3

Query: 204 EDAHNTILDFDV---NTSLFAVYDGHGGAEVATYCSQNL-PNYIKNTDAYKSGDYTKALE 371
           ED H  ++D ++   N   + ++DGH G   + +  Q+L P  ++      +  Y +   
Sbjct: 98  EDDHVEVIDRNIDEGNWYFWGIFDGHSGWNTSLFLRQHLVPAVVRELQKCTASYYHQNAC 157

Query: 372 DAFLGFDATIA 404
            + L  D +I+
Sbjct: 158 PSSLALDKSIS 168


>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 266

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 90  STMGAYLSEPVTEKVSSDEANDKLECGASSMQGWRVNQEDAHNTILDF 233
           S + + +S  +  K SSD A        S++    +N+E A N +L F
Sbjct: 186 SELSSVMSSEILPKASSDSAGSFEPPVISNISKELINKEYARNVLLQF 233


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 246 SLFAVYDGHGGAEVATYCSQNLPNYIKNTDAYKSG 350
           SL   Y G+  +  A    Q++  Y+K    YKSG
Sbjct: 236 SLLRSYSGNRDSSSAPAVPQHMSGYLKKWTNYKSG 270


>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 519 AHLPLXEVLAKYENKLSSLHRNRLGDTATPLSPCLRAKKNVDE 647
           A+  +   L K   KLSSL  N+L     P+      KK ++E
Sbjct: 51  AYQMMYSKLLKSLPKLSSLEENKLTKLKAPIEDMENTKKELEE 93


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = -3

Query: 357 YNLH----FYKHLCFLCSLVDFVNNMWQLQHLHDRHTP 256
           +NLH    FY+ L    SL+  +NN W   +L+  ++P
Sbjct: 146 FNLHNFQSFYQKLSLDSSLILALNNFWSFFNLYLTNSP 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,438
Number of Sequences: 5004
Number of extensions: 59322
Number of successful extensions: 153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)