Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_G01
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 46 6e-06
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 36 0.004
SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 33 0.027
SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated |Schizosac... 29 0.76
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 27 1.8
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 27 1.8
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 27 3.1
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.1
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 26 4.1
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 26 4.1
SPCC126.13c |||histone deacetylase complex subunit, SAP128 famil... 26 5.4
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 5.4
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 26 5.4
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 5.4
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.1
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.1
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 45.6 bits (103), Expect = 6e-06
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Frame = +3
Query: 420 ITEDKNDS-KTKKRGQNKSRPKIFKDGKESKPCPTILDVESSEQLKICQYN-NCKFIHDS 593
+ +D N K K+RGQNK R KI + + CP I + + C Y NCKF HD
Sbjct: 17 VKQDGNKKRKRKERGQNKRREKIHVK-ENNALCPAI-SIGNE-----CPYKENCKFPHDV 69
Query: 594 KQFLNSKPKDIGXQCHVY 647
+ +L +K DIG +C ++
Sbjct: 70 EAYLATKAPDIGDKCPIF 87
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 36.3 bits (80), Expect = 0.004
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Frame = +3
Query: 255 MKNSNAGVCAIKDEYVLQKSNIIEEKSYNLEKRKLXESSASFDDNNLEFKKTKIEITEDK 434
+K + A+KD+ VLQ+ N +++ +K E +N E + I + ++
Sbjct: 40 IKTKVKDINALKDQLVLQEVNHEHKENVLTKKINFLEQQLQSSNNQAEESRNLISVLRNE 99
Query: 435 NDS-KTKKRGQNKSRPKIFKDGKESKPCPTILDVES---SEQLKICQ 563
N+S KT QNK + + + + + L +S SEQL I +
Sbjct: 100 NESLKTNLENQNKRFDALTTENQSLRRANSELQEQSKIASEQLSIAK 146
>SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 33.5 bits (73), Expect = 0.027
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +3
Query: 264 SNAGVCAIKDEYVLQKSNIIEEKSYNLEKRKLXESSASFDDNNLEFKKTKIE--ITEDKN 437
S AG A++D+ L K +++ N+E E A + N E++ TK+E IT K
Sbjct: 131 SRAGAIAVQDDSPLWK--YLKDLVMNIE-----EPQARWLSENPEYEVTKVEKIITSQKE 183
Query: 438 DSKTKKRGQNK 470
+ TKK G+N+
Sbjct: 184 NQGTKKEGKNE 194
>SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 28.7 bits (61), Expect = 0.76
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = +3
Query: 255 MKNSNAGVCAIKDEYVLQKSNIIEEKS--YNLEKRKLXESSASFDDNNLEFKKTKIEITE 428
++N +K + S + + KS + K+ L S +F D+N +F K TE
Sbjct: 119 LENEQKSYEEMKQNMAINNSRLADLKSKLHPYLKKGLKISHDNFSDSN-DFSFQKKLNTE 177
Query: 429 DKNDSKTKKRGQNKSRPKIF 488
D N SKT K + K F
Sbjct: 178 DSNTSKTSTLDMYKEKLKPF 197
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +3
Query: 345 EKRKLXESSASFDDN--NLEFKKTKIEITEDKNDSKTKKRGQNKSR 476
+KRK ESS +D E K+ K E ++K + K KK + K +
Sbjct: 426 KKRKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEKKK 471
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = +3
Query: 252 NMKNSNAGVCAIKDEYVLQKSNIIEEKSYNLEKRKLXESSASFDDNNLEFKKT---KIEI 422
NM N+ A + DEYV ++ + ++S DDN+ E +IE+
Sbjct: 197 NMDNTTAFYDSDHDEYVSYGGKRASRDKIRMQAKLGIKASTQKDDNDFELLNNTTGEIEV 256
Query: 423 TEDKNDSK 446
T++ N+ +
Sbjct: 257 TKELNEEQ 264
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +3
Query: 288 KDEYVLQKSNIIEE---KSYNLEKRKLXESSASFDDNNLEFKKTKIEITEDK 434
K E + Q IIEE + +LE+ + ESSA+ + N + ++ + EDK
Sbjct: 510 KTETIAQLEQIIEELHEELRSLEEESIKESSATQQNENQHKRSSRKLLYEDK 561
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 327 EKSYNLEKRKLXESSASFDDNNLEF-KKTKIEITEDKNDSKTKKRGQNKS 473
EKS N KL E++ +F++ EF ++ K I ++K S + N++
Sbjct: 251 EKSLNERATKLSEANENFNNRFKEFEEREKSAIKQNKEQSSEGSKTANQT 300
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 498 KESKPCPT-ILDVESSEQLKI-CQYNNCKFIHDSKQFLNSKPKDIGXQC 638
KE+K P +++ Q+ + CQ N F +K+ L +K G QC
Sbjct: 389 KENKKAPVKAFQIKNYVQVFVNCQIENPSFDSQTKETLTTKVSAFGSQC 437
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/76 (19%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +3
Query: 285 IKDEYVLQKSNIIEEKSYNLEKRKLXESSASFDDNNLEFKKTKIEITED--KNDSKTKKR 458
+ +E L K E+ E++K+ E + + + + + +++D K K KK+
Sbjct: 886 LAEEEALLKEKQERERQLQEERQKMQEEVLEWRKSQQKASEDDMSLSDDEEKQSGKKKKK 945
Query: 459 GQNKSRPKIFKDGKES 506
+ K + K ++ +S
Sbjct: 946 DRKKRKSKSKQESSDS 961
>SPCC126.13c |||histone deacetylase complex subunit, SAP128 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 145
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/34 (26%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -1
Query: 399 ILNCYHQMKRNSHXVYVFQDCMIFLQLC-WIFVT 301
+++ YHQ + +H + +F+D + +Q+ W+ +T
Sbjct: 26 LISVYHQFQTKNHVLDIFEDVIPSIQVYGWLTMT 59
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 411 KIEITEDKNDSKTKKRGQ-NKSRPKIFKDGKESKPCP 518
++ + +D+ K++ Q NK +P F G SKP P
Sbjct: 219 RVPVNASWSDAGRKEKSQENKPKPTPFGSGGPSKPTP 255
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 25.8 bits (54), Expect = 5.4
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +3
Query: 363 ESSASFDD-NNLEFKKTKIEITEDKNDSKTKKRGQNKSRPKIFKDGKESKPCPTILDVES 539
E+S S DD N++ + + E T D S K+G+ R K + K ++ T D
Sbjct: 442 ETSESDDDANSISSMENEEERTSDSKSSA--KQGKGNGRAKETPEEKRARKKKTKEDKAE 499
Query: 540 SEQLKICQYNNCKFIHDS 593
+ KI +Y + + S
Sbjct: 500 KRKSKIPKYEKKRKLKQS 517
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +1
Query: 463 KTNLDQKYSKMARKAN--HVPLSLMSNLQNN*KFVNIII 573
+TNL + ++ + H+P L+SN + KF+NI++
Sbjct: 612 ETNLPTFFDQLKKNLTLFHIPQFLLSNESTSSKFLNILL 650
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 25.4 bits (53), Expect = 7.1
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = +3
Query: 300 VLQKSNIIEEKSYNLEKRKLXESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSRP 479
+L+K+ KS + E ++ + DDN+ T TE+ N + K N+S
Sbjct: 958 LLRKAKDPSPKSAS-ESSSFYQNGSDIDDNDSNSSNTSNHTTENANAQQRKLEDLNRS-- 1014
Query: 480 KIFKDGKESKP 512
F+D S+P
Sbjct: 1015 --FEDFLGSRP 1023
>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 646
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -1
Query: 399 ILNCYHQMKRNSHXVYVFQDCMIFLQL 319
+LNCY + ++ V VF+D +IF ++
Sbjct: 414 LLNCYSLLNVLANYVVVFKDRLIFQEI 440
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,212,321
Number of Sequences: 5004
Number of extensions: 39045
Number of successful extensions: 178
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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