Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_G01
(648 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56254| Best HMM Match : Arf (HMM E-Value=5.3e-31) 40 0.001
SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07) 35 0.050
SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_28346| Best HMM Match : BOP1NT (HMM E-Value=8.2e-14) 32 0.35
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 32 0.35
SB_22046| Best HMM Match : PPV_E1_N (HMM E-Value=0.61) 32 0.35
SB_12740| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.35
SB_23567| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00019) 32 0.46
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.81
SB_52452| Best HMM Match : Borrelia_orfA (HMM E-Value=1.3) 31 1.1
SB_55587| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.13) 30 1.4
SB_57515| Best HMM Match : CBFNT (HMM E-Value=3.3) 30 1.4
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_41880| Best HMM Match : TolA (HMM E-Value=2.2) 29 2.5
SB_22238| Best HMM Match : CMAS (HMM E-Value=3.5e-15) 29 2.5
SB_15300| Best HMM Match : HemolysinCabind (HMM E-Value=8.9) 29 2.5
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) 29 3.3
SB_12111| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_35536| Best HMM Match : zf-C2H2 (HMM E-Value=0.0069) 29 4.3
SB_20446| Best HMM Match : HLH (HMM E-Value=1.26117e-44) 29 4.3
SB_38123| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9) 28 5.7
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_35674| Best HMM Match : SH2 (HMM E-Value=0) 28 5.7
SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2) 28 7.5
SB_24365| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_45591| Best HMM Match : Homeobox (HMM E-Value=7.3e-18) 27 9.9
SB_15952| Best HMM Match : TPR_1 (HMM E-Value=5.8e-11) 27 9.9
SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13) 27 9.9
SB_4488| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_56254| Best HMM Match : Arf (HMM E-Value=5.3e-31)
Length = 650
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/74 (32%), Positives = 33/74 (44%)
Frame = +3
Query: 417 EITEDKNDSKTKKRGQNKSRPKIFKDGKESKPCPTILDVESSEQLKICQYNNCKFIHDSK 596
E T+ K K RG N+ RP+ + SK C E + C Y HD +
Sbjct: 35 EHTDGPPRKKKKNRGMNRQRPRDQRPDNSSKLCSFAARGEECTRGDSCFYG-----HDPQ 89
Query: 597 QFLNSKPKDIGXQC 638
+FL +K DIG +C
Sbjct: 90 KFLETKEPDIGKEC 103
>SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07)
Length = 844
Score = 35.1 bits (77), Expect = 0.050
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +3
Query: 303 LQKSNIIEEKSYNLEKRKLXESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSRPK 482
+QK EE+S + E++K SS K+ K + +DK D K ++ P+
Sbjct: 463 IQKERTEEEESSSKEEKKQESSSKEEKKQESSSKEEKKQEKDDKKDDKEGRKASKSPAPR 522
Query: 483 IFKDGKESKPCP 518
++ KP P
Sbjct: 523 SDSRKEKEKPAP 534
>SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 942
Score = 33.5 bits (73), Expect = 0.15
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +3
Query: 258 KNSNAGVCAIKDEYVLQKSNIIEEKSYNLEKRKLXESSASFDDNNLEFKKTKIEITEDKN 437
K+SN G I ++ +K + + K ++ +K+K + + K + E ++DK
Sbjct: 138 KDSNEGSLTISNDLNSEKKDKKKHKKHSKDKKKKKHKKEKKREKDKHKHKQEKESSDDKP 197
Query: 438 DS-KTKKRGQNKSRPKIFKDGKESK 509
D T K+ K PK DG+E K
Sbjct: 198 DELSTPKKISEKGSPK--GDGRERK 220
>SB_28346| Best HMM Match : BOP1NT (HMM E-Value=8.2e-14)
Length = 258
Score = 32.3 bits (70), Expect = 0.35
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +3
Query: 381 DDNNLEFKKTKIEITEDKNDSKTKKRGQNKSR---PKIFKDGKESKPCPTILDVESSEQ 548
DD N + K+ IE ++ + K +RG+ S+ P I KD K + + D E+S++
Sbjct: 75 DDANKDSKENNIEHDKNDDQKKNTERGKKPSKVNTPNIIKDNKLREAEKDVDDTETSDE 133
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 32.3 bits (70), Expect = 0.35
Identities = 26/98 (26%), Positives = 41/98 (41%)
Frame = +3
Query: 294 EYVLQKSNIIEEKSYNLEKRKLXESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKS 473
EY +EKS +KRK + + DD E KT+ + ED D + + +
Sbjct: 1518 EYEAMMKAAADEKSKEKKKRKKEDEATRSDDGTDE--KTEDSMQEDAKDLDSSNTASDTT 1575
Query: 474 RPKIFKDGKESKPCPTILDVESSEQLKICQYNNCKFIH 587
+ K GK + T+L+ E L C + F+H
Sbjct: 1576 KEK----GKNKEKDKTVLE-RWEESLMACTSLSQVFVH 1608
>SB_22046| Best HMM Match : PPV_E1_N (HMM E-Value=0.61)
Length = 362
Score = 32.3 bits (70), Expect = 0.35
Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +3
Query: 312 SNIIEEKSYNLEKRKLXESSASFDDNN-LEFKKTKIEITEDKNDSKTKKRGQNKSRPKIF 488
+N+ EK Y + +L + + DD + +E K ++ I++ + +++ G+N P+I
Sbjct: 240 NNVAVEKKYTINAEELHGTGGTIDDRDAMEGGKGEVYISQIEEENENGNEGENAIPPEIP 299
Query: 489 KDGKESK 509
D +K
Sbjct: 300 PDQDNTK 306
>SB_12740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1306
Score = 32.3 bits (70), Expect = 0.35
Identities = 23/109 (21%), Positives = 50/109 (45%)
Frame = +3
Query: 282 AIKDEYVLQKSNIIEEKSYNLEKRKLXESSASFDDNNLEFKKTKIEITEDKNDSKTKKRG 461
++ DEY +++ +E+ + + E+++SF DN++ + KI +++N +
Sbjct: 388 SLADEY--KQALYVEDNTQTIGVEGRVENNSSFIDNSVCIEFLKISQQDNQNLDSSHSMH 445
Query: 462 QNKSRPKIFKDGKESKPCPTILDVESSEQLKICQYNNCKFIHDSKQFLN 608
+ K+ FKD S +D+ + Q +F ++FLN
Sbjct: 446 ETKN----FKDSVTSSHSIASIDITPGNAYMLAQTKPDEFASQDQEFLN 490
>SB_23567| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00019)
Length = 653
Score = 31.9 bits (69), Expect = 0.46
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 486 FKDGKESKPCPTILDVESSEQLKICQYNNCKFIHDSKQFLNSKPKDIGXQCH 641
+K K SK PT+++V +S Q I N+ ++Q + KP D G H
Sbjct: 486 YKPLKRSKITPTVINVATSSQTNITDVNSISKKQYTEQVNDLKPDDSGLCAH 537
>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3934
Score = 31.1 bits (67), Expect = 0.81
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +3
Query: 255 MKNSNAGVCAIKDEYVLQKSNIIEEKSYNLEKRKLXESSASFDDNNLEFKKTKIEITEDK 434
+KN AGV KDE + K I + EK+ + DDN E + ++ +++
Sbjct: 2772 IKNLEAGVRTAKDETRMDKKRIATLEVEYAEKQGMARDLEKMDDNLTELRLKYDDLVKER 2831
Query: 435 NDSKT 449
+ K+
Sbjct: 2832 EEVKS 2836
>SB_52452| Best HMM Match : Borrelia_orfA (HMM E-Value=1.3)
Length = 471
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +3
Query: 330 KSYNLEKRKLXESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSRPKIFKDG--KE 503
K N +++K E + DN KK E +ED+ +K++ + + + K +G K+
Sbjct: 259 KPKNKKRKKKKEKKTNETDNESSIKKKSCEDSEDEEHLPSKEKKKKRKKSKDSSEGYIKQ 318
Query: 504 SK 509
SK
Sbjct: 319 SK 320
>SB_55587| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.13)
Length = 359
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 423 TEDKNDSKTKKRGQNKSRPKIFKDGKESKPCPTILDVESSEQLK 554
+E + + KK+GQNK + +GKESK L+ + +++K
Sbjct: 187 SEWEKERVAKKKGQNKIDDPVETNGKESKDIERFLEWDQEQKVK 230
>SB_57515| Best HMM Match : CBFNT (HMM E-Value=3.3)
Length = 213
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +3
Query: 318 IIEEKSYNLEKRKL-XESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSRPKIFKD 494
+ ++K +K K E+S + D+ +KT+I + E+K + K+ + P D
Sbjct: 134 MFKKKDKESDKDKAGSETSLNAADDEETKEKTEIAVEEEKEGEEFKREEAAEETPAEVAD 193
Query: 495 GKESK 509
GKE K
Sbjct: 194 GKEKK 198
>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2848
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/57 (29%), Positives = 31/57 (54%)
Frame = +3
Query: 384 DNNLEFKKTKIEITEDKNDSKTKKRGQNKSRPKIFKDGKESKPCPTILDVESSEQLK 554
D++ E +T+ E ++K KK+G NK + +GKESK L+ + +++K
Sbjct: 1363 DSDSEATETESEWEKEK---VAKKKGHNKIDDPVETNGKESKDIERFLEWDQEQKVK 1416
>SB_41880| Best HMM Match : TolA (HMM E-Value=2.2)
Length = 374
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/84 (21%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Frame = +3
Query: 288 KDEYVLQKSNIIEEKSYNLEKRKLXESSASFDDNNLEFKKTKIEITEDKN-----DSKTK 452
++ +L++ ++ + + +++ E D+ ++ K+ ++EI EDK + T+
Sbjct: 203 EENRILEEEERVKREEEEKKAKEVEEKRMGEDEEQIKLKEEEVEIKEDKTAELELEETTE 262
Query: 453 K----RGQNKSRPKIFKDGKESKP 512
K + +N S KI K +E P
Sbjct: 263 KSNHAKRENLSPSKIHKKDREKTP 286
>SB_22238| Best HMM Match : CMAS (HMM E-Value=3.5e-15)
Length = 1605
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +3
Query: 279 CAIKDEYVLQKSNIIEEKSYNLEKRKLXESSASFDDNNLEFKKTKIEITEDKNDSKTKKR 458
C + +YV +E KSY+ K + S+ D L+FK ++ E +N+ T +
Sbjct: 1305 CNVMSKYVKFNDPSLE-KSYSNRKIPIYVLYESYADGKLDFKMEPLQALEHRNEFTTYEL 1363
Query: 459 G 461
G
Sbjct: 1364 G 1364
>SB_15300| Best HMM Match : HemolysinCabind (HMM E-Value=8.9)
Length = 159
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +3
Query: 357 LXESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSRPKIFKDGKESKPCPTILDVE 536
+ + SFD + KK K+E+ + +D++ N + + D KE K T+ D+
Sbjct: 1 MADDGMSFDPTKKKKKKKKVELDLEADDAEDTI--SNSAPEEQATDNKEEKGTITLHDIT 58
Query: 537 SSEQ 548
+EQ
Sbjct: 59 DAEQ 62
>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
Length = 1452
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/61 (22%), Positives = 33/61 (54%)
Frame = +3
Query: 309 KSNIIEEKSYNLEKRKLXESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSRPKIF 488
K+N +E K + +++ + L F+ +E + K+D+ +K G++K++ ++F
Sbjct: 439 KANKLESKIHKWQRKHPSVDKQNRTSAFLAFEADNLEEVQGKHDTVPEKFGRSKAQLELF 498
Query: 489 K 491
K
Sbjct: 499 K 499
>SB_12111| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 447
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 387 NNLEFKKTKIEITEDKNDSKTKKRGQNKSRPKIFKD 494
NN+ KK K + N+ + K G K+ PK+ +D
Sbjct: 36 NNVSMKKDKALLMIGSNEFEFKASGTRKNMPKVIRD 71
>SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1266
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = +3
Query: 291 DEYVLQKS----NIIEEKSYNLEKRKLXESSASFDDNNLEFKKTKIEITEDKNDSKTKKR 458
DE ++ K NI E + +L ++ + +D+ N T + + K+D KT ++
Sbjct: 824 DEMIMDKPPPQINITETQDNSLGDLQIEDVEERYDEENTTIGPTATTVEQPKDDKKT-RQ 882
Query: 459 GQNKSRPK 482
G+ PK
Sbjct: 883 GRKTPAPK 890
>SB_35536| Best HMM Match : zf-C2H2 (HMM E-Value=0.0069)
Length = 657
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/89 (20%), Positives = 43/89 (48%)
Frame = +3
Query: 288 KDEYVLQKSNIIEEKSYNLEKRKLXESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQN 467
+DE + N +E Y+ ++ E A+ DD++ K K++ T+D+ + K+R +
Sbjct: 168 RDEMARELDNAKKELQYH---KQTTEECATADDDDYAMLKLKLKSTKDELFTYQKRRNEY 224
Query: 468 KSRPKIFKDGKESKPCPTILDVESSEQLK 554
+ + + ++ T+ + E++K
Sbjct: 225 EEKLNALLEKEKIVEMTTLQLEDEKEKIK 253
>SB_20446| Best HMM Match : HLH (HMM E-Value=1.26117e-44)
Length = 424
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = +3
Query: 246 HINMKNSNAGVCAIKDEYVLQKSNIIEEKSYNLEKRKLXESSASFDDNNLEFKKTKIEIT 425
H +NSN+ +D+YV + + E LEK + S LEF I++
Sbjct: 321 HQRDENSNS---IYEDDYVEEIQKELIELRCQLEKERRLRISLEAQKQKLEFDLNDIKLK 377
Query: 426 EDKNDSKT 449
+ N SKT
Sbjct: 378 TEINSSKT 385
>SB_38123| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 853
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +3
Query: 336 YNLEKRKLXESSASFDDNNLEFKK--TKIEITEDKNDSKTKKRGQNKSRPKIFKDGKESK 509
+N+E + + + ++N + K+ +IE ++ K T+ + Q++SRPK +GK+
Sbjct: 594 HNIESQNNPKGGSHRSESNSKTKRGPKRIEESQSKPKRDTEGKEQSQSRPKGDTEGKDES 653
Query: 510 PCPTILDVESSEQL 551
D E+L
Sbjct: 654 QQKPKGDTGGKEEL 667
>SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1449
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 426 EDKNDSKTKKRGQNKSRPKIFKDGKESKPCPT 521
E + D K KKR + K R K + S CP+
Sbjct: 1191 EHRKDKKKKKRSEEKERKKHKLEAASSSACPS 1222
>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
Length = 451
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -1
Query: 399 ILNCYHQMKRNSHXVYVFQDCMIFLQLCWIFVTHIHLLLHKLLRWNSSYLCV 244
+L H + +H V++ C +FL C + + + + H +LR LCV
Sbjct: 301 VLRVAHAVLSVAHEVFLMS-CCVFLMSCCVLLMPLLRVAHAVLRVAHVVLCV 351
>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1789
Score = 28.3 bits (60), Expect = 5.7
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Frame = +3
Query: 288 KDEYVLQKSNIIEEK-SYNLEKRKLXESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQ 464
KD+ +K EEK + E++K+ +S S D ++T +E E K D + G+
Sbjct: 1599 KDDTASEKKESSEEKMEVDGEEQKVEKSPESVDKTE-GHERTDVEDDEKKADDSNEDIGK 1657
Query: 465 NKSRPKIFKDGK--ESKPCPTILDVESSEQ 548
+D K ESK D ES ++
Sbjct: 1658 KDESRDQAEDAKKEESKTEEMETDAESKQE 1687
>SB_35674| Best HMM Match : SH2 (HMM E-Value=0)
Length = 871
Score = 28.3 bits (60), Expect = 5.7
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Frame = +3
Query: 288 KDEYVLQKSNIIEEK-SYNLEKRKLXESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQ 464
KD+ +K EEK + E++K+ +S S D ++T +E E K D + G+
Sbjct: 178 KDDTASEKKESSEEKMEVDGEEQKVEKSPESVDKTE-GHERTDVEDDEKKADDSNEDIGK 236
Query: 465 NKSRPKIFKDGK--ESKPCPTILDVESSEQ 548
+D K ESK D ES ++
Sbjct: 237 KDESRDQAEDAKKEESKTEEMETDAESKQE 266
>SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2149
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = +3
Query: 333 SYNLEKRKLXESSASFDDNN---LEFKKTKIEITEDKNDSKTK-KRGQNKSRPK 482
++N+ K+KL E A ++ N E K+ KI + E+ +K + + + RPK
Sbjct: 1317 NHNITKKKLQEEQAKREERNKLFKELKQRKISVDEEVEQAKDELMKSLDARRPK 1370
>SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)
Length = 1388
Score = 27.9 bits (59), Expect = 7.5
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Frame = +3
Query: 261 NSNAGVCAIKDEYVLQKSNIIEEKSYNLEKRKLXESSASFDDNNLEFKKTKIEITEDKND 440
N+ G I D+Y+ + + + +EKS L+ + ++ F DN + K+ + N
Sbjct: 282 NTQCGKSIIPDDYLFRLNPLPDEKSDQLQAVQPRQAGKKF-DNFIVHNKS------EHNH 334
Query: 441 SKTKKRGQNKSRPKIFKDGKESKPCPTILD---VESSEQLKICQ 563
++ +K+ R F ++ K C T D S +CQ
Sbjct: 335 NRKRKKNCQARRVYRFVPTRKKKHCKTSDDTIATNRSASSNVCQ 378
>SB_24365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +3
Query: 321 IEEKSYNLEKRKLXESSASFDDNNLEFK-KTKIEITEDKNDSKTKKRGQNKSRPKI 485
+ Y++ + ++ + DD+ E + + ++E ED + +KTKK+ + K++ KI
Sbjct: 415 VHPSHYSVPEDEITSADEDEDDDKDEKEDEDELEEKEDWSKNKTKKKTKEKTKEKI 470
>SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 608
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +3
Query: 321 IEEKSYNLEKRKLXESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSRPKIFKD-G 497
+E + K +L + N + KK K + +DK K +NK + K KD
Sbjct: 370 VEREDSMAMKEELHSKGTNTVKNKTKNKKDKTKNNKDKTKENKDKTKENKDKTKNNKDKT 429
Query: 498 KESK 509
KE+K
Sbjct: 430 KENK 433
>SB_45591| Best HMM Match : Homeobox (HMM E-Value=7.3e-18)
Length = 293
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +3
Query: 423 TEDKNDSKTKKRGQNKSRPKIFKDGKESKPCPTILD---VESSEQL 551
T D+ D K K+R K + KI + + PTI D +E+S QL
Sbjct: 162 TSDRADIKRKRRNLTKRQQKILETAYSTIKYPTIEDRQRLETSTQL 207
>SB_15952| Best HMM Match : TPR_1 (HMM E-Value=5.8e-11)
Length = 672
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +3
Query: 342 LEKRKLXESSASFD-DNNLEFKKTKIEI---TEDKNDSKTKKRGQNKSRPKIFKDGKESK 509
+ K S+ SFD D+ E + + E+ + DS+T KR + + + KIF++ KE +
Sbjct: 64 VSKSDSLRSALSFDFDSETEKIRREYEVFRAQQANRDSRTPKRDKVQRQFKIFREAKEQE 123
>SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)
Length = 562
Score = 27.5 bits (58), Expect = 9.9
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Frame = +3
Query: 288 KDEYVLQKSNIIEEKSYNLEKR-----KLXESSASFDDNNLEFKKTKIEITEDKNDSKTK 452
K L+K + +EK + +R K E +D+ E K + E ED+ +
Sbjct: 464 KKSRTLRKLTVAKEKGASERRRRGRSPKSDEQKKKDEDSKPEEAKPE-EPKEDEKSKPEE 522
Query: 453 KRGQNKSRPKIFKDGKESKPCPTILDVES 539
+ + +++P+ K +E+KP T ++ E+
Sbjct: 523 TKAEEEAKPEAPKAEEEAKPGETKVEEEA 551
>SB_4488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 504 SKPCPTILDVESSEQLKICQYNNC 575
S CP +L ++ E LK C+++ C
Sbjct: 302 SLQCPALLKMDLPEHLKTCEHSRC 325
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,606,215
Number of Sequences: 59808
Number of extensions: 272488
Number of successful extensions: 972
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -