Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_G01
(648 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g27220.1 68418.m03247 protein transport protein-related low s... 39 0.003
At3g28770.1 68416.m03591 expressed protein 38 0.008
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 38 0.008
At1g56660.1 68414.m06516 expressed protein 34 0.094
At4g38890.1 68417.m05508 dihydrouridine synthase family protein ... 32 0.29
At5g62240.1 68418.m07815 expressed protein various predicted pro... 32 0.38
At2g06210.2 68415.m00683 phosphoprotein-related low similarity t... 31 0.66
At2g06210.1 68415.m00684 phosphoprotein-related low similarity t... 31 0.66
At5g64905.1 68418.m08164 expressed protein 30 1.2
At3g10010.1 68416.m01201 HhH-GPD base excision DNA repair family... 30 1.5
At5g51920.1 68418.m06441 expressed protein ; expression supporte... 29 2.0
At5g08630.1 68418.m01026 DDT domain-containing protein low simil... 29 2.7
At1g76780.1 68414.m08935 expressed protein ; expression supporte... 29 2.7
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 29 2.7
At3g12190.1 68416.m01520 hypothetical protein 29 3.5
At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding famil... 28 4.7
At1g50830.1 68414.m05716 hypothetical protein 28 4.7
At1g01440.1 68414.m00059 extra-large G-protein-related weak simi... 28 4.7
At4g27430.1 68417.m03942 COP1-interacting protein 7 (CIP7) ident... 28 6.1
At2g39320.1 68415.m04827 OTU-like cysteine protease family prote... 28 6.1
At2g15080.2 68415.m01719 disease resistance family protein conta... 28 6.1
At2g15080.1 68415.m01718 disease resistance family protein conta... 28 6.1
At2g11462.1 68415.m01231 hypothetical protein 28 6.1
At5g60530.1 68418.m07590 late embryogenesis abundant protein-rel... 27 8.1
At5g57120.1 68418.m07132 expressed protein weak similarity to SP... 27 8.1
At3g31540.1 68416.m04025 hypothetical protein 27 8.1
At1g64880.1 68414.m07355 ribosomal protein S5 family protein con... 27 8.1
>At5g27220.1 68418.m03247 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1181
Score = 38.7 bits (86), Expect = 0.003
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Frame = +3
Query: 276 VCAIKDEY--VLQKSNIIEE--KSYNLEKRKLXESSASFDDNNLEFKKTKIEITEDKNDS 443
+C++KD Y LQ I E+ KS+ E +K+ +S F E K K +TE + +
Sbjct: 513 LCSVKDTYRECLQNWEIKEKELKSFQEEVKKIQDSLKDFQSKEAELVKLKESLTEHEKEL 572
Query: 444 KTKKRGQNKSRPKIFKDGKESKPCPTILDVESSEQLKICQYNNCKFIHDSKQFLNSK 614
KK+ + KI K+ LD + EQLK + K + + + LN+K
Sbjct: 573 GLKKKQIHVRSEKIELKDKKLDAREERLD-KKDEQLKSAEQKLAKCVKEYE--LNAK 626
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/74 (27%), Positives = 36/74 (48%)
Frame = +3
Query: 288 KDEYVLQKSNIIEEKSYNLEKRKLXESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQN 467
K ++ KS EE ++EK + S+ +D N + K +++ + ++D K KK +
Sbjct: 1102 KKKHEESKSRKKEEDKKDMEKLEDQNSNKKKEDKNEKKKSQHVKLVKKESDKKEKKENEE 1161
Query: 468 KSRPKIFKDGKESK 509
KS K + K K
Sbjct: 1162 KSETKEIESSKSQK 1175
Score = 36.7 bits (81), Expect = 0.013
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Frame = +3
Query: 306 QKSNIIEEKSYNLEKRKLXESSASFDDNNLEFK----KTKIEITEDKNDSKTKKRGQNKS 473
+ S + EE N EK++ E SAS + E++ KTK E ++K S+ KKR + S
Sbjct: 985 ENSKLKEENKDNKEKKE-SEDSASKNREKKEYEEKKSKTKEEAKKEKKKSQDKKREEKDS 1043
Query: 474 RP-KIFKDGKESKPCPTILDVESSEQLKICQYNNCKFIHDSKQFLNSK 614
K K+ +ES+ E +++ K + + K D K+ ++K
Sbjct: 1044 EERKSKKEKEESRDLKAKKKEEETKEKKESENHKSKKKEDKKEHEDNK 1091
Score = 34.7 bits (76), Expect = 0.054
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +3
Query: 312 SNIIEEKSYNLEKRKLXESSA--SFDDNNLEFKK-TKIEITEDKNDSKTKKRGQNKSRPK 482
S I++ K N + K E S +DNN+E K+ TK E+ KND ++K + K K
Sbjct: 644 SKIVDNKGGNADSNKEKEVHVGDSTNDNNMESKEDTKSEVEVKKNDGSSEKGEEGKENNK 703
Query: 483 IFKDGKE 503
+ K+
Sbjct: 704 DSMEDKK 710
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/80 (25%), Positives = 39/80 (48%)
Frame = +3
Query: 306 QKSNIIEEKSYNLEKRKLXESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSRPKI 485
+KS +E+S +L+ +K E + ++ K K E ++ D+K+ K+ ++K K
Sbjct: 1046 RKSKKEKEESRDLKAKKKEEETKEKKESE-NHKSKKKEDKKEHEDNKSMKKEEDKKEKKK 1104
Query: 486 FKDGKESKPCPTILDVESSE 545
++ K K D+E E
Sbjct: 1105 HEESKSRKKEEDKKDMEKLE 1124
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 37.5 bits (83), Expect = 0.008
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Frame = +3
Query: 264 SNAGVCAIKDEYVLQKSNIIEEKSYNLEKRKLXESSASFDD-NNLEFKKTKIEITEDKND 440
SN K++ S ++E + + ++ SAS DD +N E K K E+ ++K
Sbjct: 377 SNEQSAKAKEKLSESSSEVVENQQTTEDTTEVSADSASMDDRSNAEQPKEKEEVEKEKAK 436
Query: 441 SKTKKRGQNKSRPKIFKDGKESKPCPTILDVESSEQL 551
K++G+ K K + KE LDV + E+L
Sbjct: 437 DTKKEKGKEKDSEKKMEHEKEKGKS---LDVANFERL 470
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 33.9 bits (74), Expect = 0.094
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 7/103 (6%)
Frame = +3
Query: 258 KNSNAGVCAIKDEYVLQKSNIIEEKSYNLE-KRKLXESSASFDDNNLEFKKTKIEITEDK 434
K S G +K++ +K N +E + + + K + E+ +D+ E KK+K+E E +
Sbjct: 368 KKSEKGEKDVKEDK--KKENPLETEVMSRDIKLEEPEAEKKEEDDTEEKKKSKVEGGESE 425
Query: 435 NDSKTKKRGQNKSR------PKIFKDGKESKPCPTILDVESSE 545
K KK+ + K++ PK+ +D +E K + +E S+
Sbjct: 426 EGKKKKKKDKKKNKKKDTKEPKMTEDEEEKKDDSKDVKIEGSK 468
Score = 28.7 bits (61), Expect = 3.5
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Frame = +3
Query: 288 KDEYVLQKSNIIEEKSYNLEKRKLXESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQN 467
K E V Q+ +EE+ K+K + S + ++ + KK K + E K++ K +G+
Sbjct: 158 KHEDVSQEKEELEEEDGKKNKKKEKDESGT-EEKKKKPKKEKKQKEESKSNEDKKVKGKK 216
Query: 468 KSRPK--IFKDGKESKPCPTILDVESSEQ 548
+ K + K+ +E K D E E+
Sbjct: 217 EKGEKGDLEKEDEEKKKEHDETDQEMKEK 245
>At4g38890.1 68417.m05508 dihydrouridine synthase family protein
contains Pfam domain, PF01207: Dihydrouridine synthase
(Dus)
Length = 700
Score = 32.3 bits (70), Expect = 0.29
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 513 CPTILDVESSEQLKICQYNN-CKFIHDSKQFLNSKPKDIGXQC 638
CP V +E + CQY + C+F HD + F K DI QC
Sbjct: 109 CP---QVARTEDVDSCQYKDKCRFNHDIEAFKAQKADDIEGQC 148
>At5g62240.1 68418.m07815 expressed protein various predicted
proteins, Arabidopsis thaliana; expression supported by
MPSS
Length = 366
Score = 31.9 bits (69), Expect = 0.38
Identities = 21/72 (29%), Positives = 36/72 (50%)
Frame = +3
Query: 399 FKKTKIEITEDKNDSKTKKRGQNKSRPKIFKDGKESKPCPTILDVESSEQLKICQYNNCK 578
+ +T ++++ K+ SKTK +RP +++KP LD+ S + L CQ + K
Sbjct: 108 YNQTVKDVSKKKSKSKTKTSNSTLTRPTASLLARQNKP----LDIYSVQLLTRCQRSLAK 163
Query: 579 FIHDSKQFLNSK 614
F + L SK
Sbjct: 164 FGENVAPVLVSK 175
>At2g06210.2 68415.m00683 phosphoprotein-related low similarity to
phosphoprotein from Mus musculus GI:1236239; contains
Pfam profile PF00515 TPR Domain
Length = 852
Score = 31.1 bits (67), Expect = 0.66
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +3
Query: 324 EEKSYNLEKRKLXESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSRPKIFKDGKE 503
E++ Y LEKRK E +F++ K K+ G NK + ++ D E
Sbjct: 655 EQRKYQLEKRKQEEELRRLKQEEEKFQRIK-------EQWKSSTPGSNKRKDRVEDDDGE 707
Query: 504 SKP 512
SKP
Sbjct: 708 SKP 710
>At2g06210.1 68415.m00684 phosphoprotein-related low similarity to
phosphoprotein from Mus musculus GI:1236239; contains
Pfam profile PF00515 TPR Domain
Length = 1064
Score = 31.1 bits (67), Expect = 0.66
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +3
Query: 324 EEKSYNLEKRKLXESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSRPKIFKDGKE 503
E++ Y LEKRK E +F++ K K+ G NK + ++ D E
Sbjct: 867 EQRKYQLEKRKQEEELRRLKQEEEKFQRIK-------EQWKSSTPGSNKRKDRVEDDDGE 919
Query: 504 SKP 512
SKP
Sbjct: 920 SKP 922
>At5g64905.1 68418.m08164 expressed protein
Length = 96
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 366 SSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSRP 479
SS S +D +++ K+ + E ED + K RG+NK++P
Sbjct: 48 SSHSEEDESIDIKEEEEEEEEDGMTIEIKARGKNKTKP 85
>At3g10010.1 68416.m01201 HhH-GPD base excision DNA repair family
protein similar to DEMETER protein [Arabidopsis
thaliana] GI:21743571; contains Pfam profile PF00730:
HhH-GPD superfamily base excision DNA repair protein
Length = 1309
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 402 KKTKIEITEDKNDSKTKKRGQNKSRPKIFKDGKESK 509
KK KI ++K+ +T + K RPK+ ++GK K
Sbjct: 185 KKRKIARNDEKSQLETPTLKRKKIRPKVVREGKTKK 220
>At5g51920.1 68418.m06441 expressed protein ; expression supported
by MPSS
Length = 570
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 309 KSNIIEEKSYNLEKRKLXESSASFDDNNLEFKKTKIE--ITEDKNDSKTKKRG 461
+S + E + EKR ++A F L+ +K+ +T KN SKTKK+G
Sbjct: 220 ESEAVSEINRVSEKRGAKVAAAEFSWPRLKLCSSKLRKLVTAGKNGSKTKKKG 272
>At5g08630.1 68418.m01026 DDT domain-containing protein low
similarity to SP|Q9NRL2 Bromodomain adjacent to zinc
finger domain protein 1A (ATP-utilizing chromatin
assembly and remodeling factor 1) (ATP-dependent
chromatin remodelling protein) (Williams syndrome
transcription factor-related chromatin remodeling factor
180) {Homo sapiens}; contains Pfam profile PF02791: DDT
domain
Length = 723
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +3
Query: 282 AIKDEYVLQKSNIIEEKSYNLEKRKLXESSASFDDNNLEFKKTKIEITEDKNDSK 446
A ++E + + I EEK + E++ D+N LE KK ++ E DSK
Sbjct: 447 ARREEALAEARQIREEKE---RSKTGEEANGVLDNNRLEKKKNSAQVLESSEDSK 498
>At1g76780.1 68414.m08935 expressed protein ; expression supported by
MPSS
Length = 1871
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +3
Query: 306 QKSNIIEEKSYNLEKRKLXESSASFDDNNLEFKKTKIEI----TEDKNDSKTKKRGQNKS 473
QK N+I + N E+ + ++ E K++ ++ TE+K+ ++ ++ +
Sbjct: 1079 QKENVIAKAELNTEEDSFKKVEEIEKQDHGELKRSMVQAKRQETEEKDKTRAMEKNETVE 1138
Query: 474 RPKIFKDGKESK 509
R K KDG K
Sbjct: 1139 RRKQTKDGSLGK 1150
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 324 EEKSYNLEKRKLXESSASFDDNNLEFKKTKIEITE 428
EEK +LEK++L S +D E +K + E+T+
Sbjct: 463 EEKRLSLEKQQLLSDKESLEDLQQEIEKIRAEMTK 497
>At3g12190.1 68416.m01520 hypothetical protein
Length = 269
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/57 (28%), Positives = 34/57 (59%)
Frame = +3
Query: 288 KDEYVLQKSNIIEEKSYNLEKRKLXESSASFDDNNLEFKKTKIEITEDKNDSKTKKR 458
K++++ ++S+ +E K LEKR ++A + E K+ K++ + + +S+ KKR
Sbjct: 61 KEKHLEKRSHELESKGKILEKRAREINTADGFRRDFEEKQRKLDRLKREIESEEKKR 117
>At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to SP|O14647
Chromodomain-helicase-DNA-binding protein 2 (CHD-2) {Homo
sapiens}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00385: 'chromo' (CHRromatin
Organization MOdifier)
Length = 1722
Score = 28.3 bits (60), Expect = 4.7
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +3
Query: 285 IKDEYVLQKSNIIEEKSYNLEKRKLXESSASFDDNNLE----FKKTKIEITEDKNDSKTK 452
+ D V+QK N LEKR+ + S +FD N L F ++ EDKND ++K
Sbjct: 1080 VLDHLVIQKLNA----EGRLEKRETKKGS-NFDKNELSAILRFGAEEL-FKEDKNDEESK 1133
Query: 453 KR 458
KR
Sbjct: 1134 KR 1135
>At1g50830.1 68414.m05716 hypothetical protein
Length = 768
Score = 28.3 bits (60), Expect = 4.7
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = +3
Query: 288 KDEYVLQKSNIIEEKSYNLEKRKLXESSASFDDNNLEFKK---TKIEITEDKNDSKTKKR 458
K++Y N + + S L KR + DD++ +K TKIE +++D T K
Sbjct: 587 KEKYSSNAENTLGDASETLGKRARRYMTVDSDDDSEPCQKLASTKIEQRSEEDDETTSK- 645
Query: 459 GQNKSRPKIFKD 494
+K+R +IF D
Sbjct: 646 -SHKTR-EIFND 655
>At1g01440.1 68414.m00059 extra-large G-protein-related weak
similarity to extra-large G-protein (AtXLG1)
(GI:3201682) [Arabidopsis thaliana]
Length = 664
Score = 28.3 bits (60), Expect = 4.7
Identities = 25/95 (26%), Positives = 40/95 (42%)
Frame = +3
Query: 264 SNAGVCAIKDEYVLQKSNIIEEKSYNLEKRKLXESSASFDDNNLEFKKTKIEITEDKNDS 443
SN AI Y + + +++SY + ES A+ D + T E +ED S
Sbjct: 427 SNVNRAAIT--YGMAQLGYYKQESYTKQDSLKSESVATETDVSYNEYYTNTEESEDSRIS 484
Query: 444 KTKKRGQNKSRPKIFKDGKESKPCPTILDVESSEQ 548
K K G+ RP+ K E ++ S++Q
Sbjct: 485 KASKEGR---RPRNRKQSSEHSFAEVTNNISSNDQ 516
>At4g27430.1 68417.m03942 COP1-interacting protein 7 (CIP7)
identical to COP1-Interacting Protein 7 (CIP7)
GI:3327868 from [Arabidopsis thaliana]
Length = 1058
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = +3
Query: 264 SNAGVCAIKDEYVLQKSNIIEEKSYNLEKRKLXESSASFDDNNLEFKKTKI---EITEDK 434
S A V K E ++ +EE +KR +SS ++L KKT +
Sbjct: 750 SRAAVSKSKSEMEEERKKRMEELLIQRQKRIAEKSSGGSVSSSLASKKTPTVTKSVKSSI 809
Query: 435 NDSKTKKRGQNKSRP 479
+ KT + Q+K++P
Sbjct: 810 KNEKTPEAAQSKAKP 824
>At2g39320.1 68415.m04827 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 189
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +3
Query: 321 IEEKSYNLEKRKLXESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSRPK 482
++ K N K+K E D E KK K + +DK D K K + K K
Sbjct: 123 LQRKKENEAKKKEEEEKERKDMEKEEKKKDKEDKKKDKEDKKKAKVQKEKKEKK 176
>At2g15080.2 68415.m01719 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
pimpinellifolium] gi|1184077|gb|AAC15780
Length = 983
Score = 27.9 bits (59), Expect = 6.1
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = -3
Query: 616 GLLLRNCFESCINLQLLY*QIFNCSEDSTSRIVGHGLLSLPSLNIFGRDLFW 461
GLL N FES I+L + + Q+ S S I GLL++ S I W
Sbjct: 643 GLLPENIFESLISLDVGHNQLVGKLPRSLSHISSLGLLNVESNKISDTFPLW 694
>At2g15080.1 68415.m01718 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
pimpinellifolium] gi|1184077|gb|AAC15780
Length = 983
Score = 27.9 bits (59), Expect = 6.1
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = -3
Query: 616 GLLLRNCFESCINLQLLY*QIFNCSEDSTSRIVGHGLLSLPSLNIFGRDLFW 461
GLL N FES I+L + + Q+ S S I GLL++ S I W
Sbjct: 643 GLLPENIFESLISLDVGHNQLVGKLPRSLSHISSLGLLNVESNKISDTFPLW 694
>At2g11462.1 68415.m01231 hypothetical protein
Length = 144
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +3
Query: 393 LEFKKTKIEITEDKNDSKTKKRGQNKSR 476
+E K+TK+E+ ED N+ +K +GQ +SR
Sbjct: 58 VEGKRTKLELKED-NEDVSKTKGQCESR 84
>At5g60530.1 68418.m07590 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 439
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = +3
Query: 288 KDEYVLQKSNIIEEKSYNLEKRKLXESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQN 467
K++ K ++K EK+ E + + KK K+E + + K K+R +
Sbjct: 61 KEQEKKDKEKAAKDKKEK-EKKDKEEKEKKDKERKEKEKKDKLEKEKKDKERKEKERKEK 119
Query: 468 KSRPKIFKDGKESK 509
+ + K KD +ES+
Sbjct: 120 ERKAKEKKDKEESE 133
>At5g57120.1 68418.m07132 expressed protein weak similarity to
SP|Q14978 Nucleolar phosphoprotein p130 {Homo sapiens}
Length = 330
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Frame = +3
Query: 258 KNSNAGVCAIKDEYVLQKSNIIEEKSYNLEKRKLXESSASFDDNNLEFKK---------T 410
K V ++E V + +IE+ +K+K S DD+ + K T
Sbjct: 126 KKKETKVKVTEEEKVKETDAVIEDGVKEKKKKKSKSKSVEADDDKEKVSKKRKRSEPEET 185
Query: 411 KIEITEDKNDSKTKKRGQN 467
K E +D +SK +K+ +N
Sbjct: 186 KEETEDDDEESKRRKKEEN 204
>At3g31540.1 68416.m04025 hypothetical protein
Length = 699
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 402 KKTKIEITEDKNDSKTKKRGQNKSRPKIFKD 494
K+ +I+ +E+K K KK+ + +P IF+D
Sbjct: 446 KRPQIDTSEEKRWKKKKKKLAKEDKPPIFED 476
>At1g64880.1 68414.m07355 ribosomal protein S5 family protein
contains similarity to 30S ribosomal protein S5
GI:6969105 from [Campylobacter jejuni]
Length = 515
Score = 27.5 bits (58), Expect = 8.1
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +3
Query: 288 KDEYVLQKSNIIEEKSYNLEKRKLXESSASFDDNNLEFKKTKIEITEDKNDSKTKKR 458
+D+ +L+K N I++K LE KL E +F ++ E+ ED+N KKR
Sbjct: 298 RDDILLEKLNAIDKK---LEI-KLSELDHTFGKKGKRLEEEIRELAEDRNALTEKKR 350
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,942,581
Number of Sequences: 28952
Number of extensions: 186291
Number of successful extensions: 777
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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