Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_F23
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.03c |||GCN5-related N-acetyltransferase |Schizosaccharom...   114   9e-27
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    31   0.11 
SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    30   0.25 
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    27   3.1  
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    25   7.1  

>SPBC577.03c |||GCN5-related N-acetyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score =  114 bits (275), Expect = 9e-27
 Identities = 80/211 (37%), Positives = 111/211 (52%), Gaps = 38/211 (18%)
 Frame = +2

Query: 77  LKLNSHTKIVGANIILVPYKKHHVPVYHEWMKSEELQKLTASEPLNLEQEYEMQKTWHDD 256
           +K+N +T +   N+ILVPY+K HV  YH WMK+EELQ+LT SEPL L++EY+MQ +W  D
Sbjct: 1   MKINQNTTVDCGNLILVPYQKCHVLKYHNWMKNEELQELTCSEPLTLDEEYQMQASWSTD 60

Query: 257 EXKCTFIIL--DKD------IFNNTAFDETGAMIGDTNIFITD----------------- 361
           E K TFI+L  + D      I ++       +MIGD N+F+T+                 
Sbjct: 61  EDKLTFIVLLNENDEAKKPSILDHVKAHSVESMIGDVNMFLTEEYADGIEEFDDSPSDAN 120

Query: 362 -----KELAIXXI---XIMIAEPSARGKKXGWEAVKLMLLY----GI-KYIKIQTFEAKI 502
                KE  +  +    +MIAEP  R K  G + V   L Y    GI K  +I  +  K+
Sbjct: 121 ATNATKESEVHIVGELELMIAEPQNRRKGYGTKIVDAFLHYVESSGIAKNKQILKYRVKV 180

Query: 503 LLQNVISIKMFKKLXFQXKSVSAVFQEVTLD 595
             QN  SI++FKKL F     +A F  V L+
Sbjct: 181 GSQNKPSIRLFKKLGFSQVKYNAYFDHVELE 211


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 958

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 15/68 (22%), Positives = 31/68 (45%)
 Frame = +2

Query: 164  WMKSEELQKLTASEPLNLEQEYEMQKTWHDDEXKCTFIILDKDIFNNTAFDETGAMIGDT 343
            W K +   KL   E   ++  Y+M +    +   C  ++ +   F+ T ++ T     D+
Sbjct: 848  WRKGDTPSKLVILETGMVKASYQMDRESLSENITCLCVVGELPFFSKTCYNATVVAELDS 907

Query: 344  NIFITDKE 367
             ++I D+E
Sbjct: 908  AVWILDRE 915


>SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +2

Query: 161 EWMKSEELQKLTASEPLNLEQEYEMQKTWHDDEXKCTFIILDKDIFNN 304
           E + SE+LQ+   S+ +    E E++    +++ K +FI LDK + NN
Sbjct: 217 EAIASEKLQQEERSQIIKSLMEEELEINEQEEKIKHSFIDLDKTLLNN 264


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +2

Query: 248 HDDEXKCTFIILDKDIFNNTAFDETGAMIGDTN 346
           +  E K T  +L+KDI+NN+A++    ++ +T+
Sbjct: 161 YSQELKLTNELLEKDIYNNSAWNHRFYVLFETS 193


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -3

Query: 453 NINLTASHPXFFPLADGSAIIIXIXXIANSLSVMNIFVS-PIIAPVS 316
           N +  A  P F+ +   S  ++ I  I +   ++NIF+S PII+ +S
Sbjct: 33  NTDTYALTPLFYWIRSTSVGLLLITIICHLFLLLNIFISIPIISHLS 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,338,331
Number of Sequences: 5004
Number of extensions: 42310
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)