Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_F23
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0005 + 4873802-4874036,4874156-4874227,4874728-4874815,487...   140   1e-33
03_02_0157 + 6008840-6008908,6009795-6009932,6010921-6011014,601...    31   1.0  
02_01_0427 - 3124209-3124307,3124453-3125240,3125510-3125867,312...    28   5.5  
02_05_0895 - 32593155-32593190,32594228-32594279,32594544-325945...    28   7.3  
02_04_0159 - 20416943-20416962,20417099-20417285                       28   7.3  
01_06_0774 + 31885440-31885481,31885670-31885702,31885772-31885873     28   7.3  

>03_02_0005 +
           4873802-4874036,4874156-4874227,4874728-4874815,
           4875192-4875339,4875429-4875467,4875642-4875722,
           4875781-4875846
          Length = 242

 Score =  140 bits (338), Expect = 1e-33
 Identities = 74/169 (43%), Positives = 104/169 (61%), Gaps = 9/169 (5%)
 Frame = +2

Query: 104 VGANIILVPYKKHHVPVYHEWMKSEELQKLTASEPLNLEQEYEMQKTWHDDEXKCTFIIL 283
           VG   +LVPY + HVP YH WMK   L + TASEPL+L+QE+++ ++W  D  K TFI+L
Sbjct: 26  VGERAVLVPYLREHVPRYHGWMKDPALLEATASEPLSLDQEFDVHRSWTLDPLKHTFIVL 85

Query: 284 DKDIFNN---TAFDETGAMIGDTNIFITD-KELAIXXIXIMIAEPS-----ARGKKXGWE 436
           DKD+           T AM+GD NI++ D  +L +  I IMIAE       +RGK  G E
Sbjct: 86  DKDLIEGGFAVGDPHTEAMVGDVNIYMNDPDDLQLAEIEIMIAEHKSTFCYSRGKGLGQE 145

Query: 437 AVKLMLLYGIKYIKIQTFEAKILLQNVISIKMFKKLXFQXKSVSAVFQE 583
           A+ +M+ + ++   I TF AKI   N  S+K+F+KL F+  S S+VF+E
Sbjct: 146 AILIMMAFAVEKYGIHTFRAKINESNTASLKLFRKLGFKDASYSSVFKE 194


>03_02_0157 +
           6008840-6008908,6009795-6009932,6010921-6011014,
           6011313-6011361,6015190-6015265,6015466-6015558,
           6015786-6015851
          Length = 194

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
 Frame = +2

Query: 116 IILVPYKKHHVP-VYHEWMKSEELQKLTASEP-LNLEQEYEM-QKTWHDDEXKCT 271
           ++  P KKH +P  Y+ +M+ EE+Q++ A++P +   + + M  K W   + +C+
Sbjct: 98  VVKPPEKKHRLPSAYNRFMR-EEIQRIKAAKPDIPHREAFSMAAKNWAKCDPRCS 151


>02_01_0427 -
           3124209-3124307,3124453-3125240,3125510-3125867,
           3125902-3126567
          Length = 636

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
 Frame = -3

Query: 414 LADGSAIIIXIXXIANSLSVMNIFVSPIIAPVSSKAVLLNISLSKMINVHLXS--SSCHV 241
           ++ GS II+ +    NSL  +     P+   +     +LNIS +K  +  L S     H+
Sbjct: 113 MSSGSIIILDVSF--NSLGRILPLSPPLTTGLKLPLQVLNISSNKF-STELPSLDGMAHL 169

Query: 240 FCISYSCSKFNGSEAVSFCNS 178
             +S S ++F+G    +FC +
Sbjct: 170 ITLSASNNRFSGHIPTNFCTN 190


>02_05_0895 -
           32593155-32593190,32594228-32594279,32594544-32594584,
           32594795-32594906,32595195-32595268,32595349-32595587,
           32595710-32596678,32596725-32596878,32596957-32597244,
           32597393-32597534,32598679-32598752,32598870-32598890
          Length = 733

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -1

Query: 518 SHSVIIFLLQMFVFLYTLFHKVTLI*QLPILFSFLWLMVQL 396
           S SV+I  +QM ++ + L   V L     +L+ F+WL+ ++
Sbjct: 524 SCSVVISTMQMIIWPFWLVFSVVLNVANSVLYPFVWLLGEI 564


>02_04_0159 - 20416943-20416962,20417099-20417285
          Length = 68

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = -3

Query: 354 MNIFVSPIIAPVSSKAVLLNISLSKMINVHLXSSSCHVFCISYSCSKFN 208
           + ++ SP  +   +K+    +S++ ++     +S  H+F I+YS S FN
Sbjct: 13  LTVYASPCSSYYCNKSRAPGLSMTLLLLRMHNASGTHLFYINYSSSNFN 61


>01_06_0774 + 31885440-31885481,31885670-31885702,31885772-31885873
          Length = 58

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 128 PYKKHHVPVYHEWMKSEELQKLTASEP 208
           PYKK HVPV  + +   EL K+  + P
Sbjct: 22  PYKKEHVPVILDSIFQSELNKMHKAVP 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,455,811
Number of Sequences: 37544
Number of extensions: 219929
Number of successful extensions: 474
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)