Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_F22
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    28   1.4  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    27   1.8  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    27   2.4  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    27   3.1  
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    26   5.5  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    26   5.5  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    25   7.2  

>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -1

Query: 436 VKDFDCSVNSITMSPTICKSAFVFSSTVFALV 341
           VKDF C  N+I+M   + K+   F S+VF+L+
Sbjct: 563 VKDFVCGANTISMQWNLQKN-MEFISSVFSLI 593


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 986

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = +3

Query: 429  SFTGLYTADTNVIGAVRYGYNLKNDDNGV---QHFEVQPETFTCESIGEPXITLSSDLSS 599
            + T +Y+ D+ ++ +V+    L +  N +      ++ PE ++  S+GE  + L S+   
Sbjct: 836  AMTKIYSFDSPLLDSVQVKGELISHSNRIITRSQSKLHPEEYSYVSVGEKILRLLSEEFV 895

Query: 600  ALEKDS 617
            +L KD+
Sbjct: 896  SLSKDA 901


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 393 GDIVIELTEQSKSFTGLYTADTNVIGAVRYGYNLKND 503
           G IVI L +  +S   L+  D   I  + YG  +  D
Sbjct: 139 GSIVINLRDSGESLPPLFFHDDECISTIEYGKQITRD 175


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 531 QPETFTCESIGEPXITLSSDLSSALEK 611
           +P+TF C+S  EP   ++S L    EK
Sbjct: 684 EPQTFNCDSFNEPGTEITSFLYDFDEK 710


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 601 HWKKIPVIIPWEPDMEP 651
           H K IP ++ W PD+ P
Sbjct: 297 HAKMIPCLLAWNPDVRP 313


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 21/70 (30%), Positives = 34/70 (48%)
 Frame = +3

Query: 414 TEQSKSFTGLYTADTNVIGAVRYGYNLKNDDNGVQHFEVQPETFTCESIGEPXITLSSDL 593
           T  + S++  Y+  T + G+  YG  + + D+  + F   PE+  C+    P   L S +
Sbjct: 48  TRHNPSWSHPYSV-TWLNGSSYYGLAISHIDDSQRVFGPDPESVPCQYYFNP-AGLYSII 105

Query: 594 SSALEKDSGN 623
            SA E  SGN
Sbjct: 106 ISAREFASGN 115


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = -1

Query: 442 SPVKDFDCSVNSITMSPTICKSAFVFSSTVFALVSIWKSDICWFFKPVMFKFLKRITI 269
           S  KD+  S +  T+S  I KSA V  S   ALV+  +    +F+    F  ++RI+I
Sbjct: 197 SSQKDYTQSTHEQTLSSPISKSASVSKSENKALVNNKRYSDSYFY----FSKMRRISI 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,814,754
Number of Sequences: 5004
Number of extensions: 59127
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)