Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_F22
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0603 - 12057820-12058094,12058164-12058305,12058469-120585... 31 1.1
08_01_0913 + 8995491-8995926,8995976-8997352,8997431-8998174,899... 30 1.4
03_04_0178 - 18131238-18131629,18137138-18137303,18137711-181379... 29 3.2
06_03_0781 - 24533949-24534330,24534666-24534817,24534901-245349... 28 7.5
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630... 28 7.5
11_04_0391 + 17127309-17127449,17127886-17127950,17129209-171293... 27 9.9
06_03_1473 - 30382528-30382731,30382814-30382930,30383048-303831... 27 9.9
>02_02_0603 -
12057820-12058094,12058164-12058305,12058469-12058515,
12058678-12058850,12059408-12059485,12059998-12060060,
12060135-12060207,12061989-12062377,12063225-12063304
Length = 439
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = +3
Query: 192 IPQYDIWPIDPLVVTSLDVIAPSDAGIVIRFKNLNIT---GLKNQQISDFQMDTKAKTVL 362
+P+Y IW + +T +D G + F+ I L N +S+ ++TK T
Sbjct: 271 LPEYLIWSVHASEITGYAAYCVAD-GTAVCFEGTTIKIGIALPNSPLSNVPLETKRATKT 329
Query: 363 LXTKADLHIV 392
A LH++
Sbjct: 330 CKDVAQLHVI 339
>08_01_0913 +
8995491-8995926,8995976-8997352,8997431-8998174,
8998402-8998748
Length = 967
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Frame = +3
Query: 249 IAPSDAGIVIRFKN--LNITGLKNQQISDFQMDTKAKTVLLXTKADL---HIVGDIVIEL 413
I P + GI K L L+ + SD++ T T+ D+ ++VG++ I +
Sbjct: 292 IIPREIGIHGNLKVFVLGYNALQATRSSDWEFMTSLTNCSSLTRLDVAHKNLVGEMPINI 351
Query: 414 TEQSKSFTGLYTADTNVIGAV 476
SK G+Y ++ + G +
Sbjct: 352 ANLSKELIGIYLSENQITGTI 372
>03_04_0178 -
18131238-18131629,18137138-18137303,18137711-18137902,
18138070-18138258
Length = 312
Score = 29.1 bits (62), Expect = 3.2
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +3
Query: 312 NQQISDFQMDTKAKTVLLXTKADLHIVGDIVIELTEQSKSFTGLYTADTNVIGAVRYGYN 491
N Q+SD D LL + + G L + + SFTG A N G++R G+
Sbjct: 37 NAQLSDSYYDASCPAALLTIRTVVSAAGCDASVLLDDTGSFTGEKGAGPNA-GSLR-GFE 94
Query: 492 LKNDDNGVQHFE-VQPETFTCESI 560
+ DN E V P+T +C I
Sbjct: 95 VV--DNAKTLLETVCPQTVSCADI 116
>06_03_0781 -
24533949-24534330,24534666-24534817,24534901-24534999,
24535127-24535302,24535983-24536292
Length = 372
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 321 ISDFQMDTKAKTVLLXTKADLHIVGDIVIELTEQSKSFTG 440
+S+FQM + + L +VGD VI+LT Q + G
Sbjct: 8 VSEFQMFWSESWAVRKAQEGLRMVGDAVIDLTAQMEGSFG 47
>02_05_0481 + 29361542-29361669,29362091-29362341,29362820-29363002,
29363099-29363206,29363583-29363697,29363781-29364819,
29364904-29365014,29365268-29365326,29366601-29366763,
29367162-29367435,29367530-29367680,29367766-29367877,
29367978-29368143,29368261-29368331,29368474-29368565,
29368721-29368883,29369134-29369205,29369236-29369263,
29369519-29369910,29369991-29370106,29370201-29370498,
29370820-29371139,29371332-29371590,29371985-29372302,
29372423-29372527,29372648-29372776,29374001-29374381,
29374467-29374604,29374949-29375185,29375264-29375569
Length = 2094
Score = 27.9 bits (59), Expect = 7.5
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = -3
Query: 221 IDRPYVVLWYPFTGFLQKLLCRTAKALHV---TKFAGF*KSISIGSHVSSKHKNQEYFQR 51
ID +V +W F G+L LL TAKA + + F SI + + + K R
Sbjct: 1197 IDTEWVYMWDKFGGYLLLLLGLTAKAEQIQDEVRLRLFLDSIGLSDLSAKEIKKWMPEDR 1256
Query: 50 SHFDV 36
HF++
Sbjct: 1257 RHFEL 1261
>11_04_0391 +
17127309-17127449,17127886-17127950,17129209-17129305,
17129729-17130193,17130505-17130528
Length = 263
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -1
Query: 199 CGIPLLVFSKNCSVALLRHCMSPSLQGFRRASPSEATYLANTKTRNT 59
CG+ L + L +H S + F++A PS+ N K R T
Sbjct: 109 CGVKLKSYKSRQQHLLDKHQFPKSFEFFKKARPSQRQRNKNQKQRQT 155
>06_03_1473 -
30382528-30382731,30382814-30382930,30383048-30383129,
30383211-30383278,30383444-30383545,30383994-30384122,
30384561-30384623,30384781-30384897,30385210-30386116,
30386225-30386494,30386929-30386998,30387114-30387273
Length = 762
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = +3
Query: 135 DMQCLSSATEQFLEKTSKGIPQYDIWPIDPLVVTSLDVIAPSDAGIVIRFKNLNITGLKN 314
D +CL E LE+ SKG ++ I +D + A +A ++ F N N G K+
Sbjct: 36 DQKCLIEKHEGGLEEFSKGYLKFGINTVDGATIYREWAPAAQEAQLIGEFNNWN--GAKH 93
Query: 315 QQISD 329
+ D
Sbjct: 94 KMEKD 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,681,714
Number of Sequences: 37544
Number of extensions: 367878
Number of successful extensions: 859
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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