Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_F17
         (386 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5DG21 Cluster: SJCHGC01271 protein; n=2; Schistosoma j...    33   2.5  
UniRef50_Q84709 Cluster: Putative uncharacterized protein; n=1; ...    31   5.8  
UniRef50_Q7NZ44 Cluster: Multidrug resistence transmembrane prot...    31   7.7  

>UniRef50_Q5DG21 Cluster: SJCHGC01271 protein; n=2; Schistosoma
           japonicum|Rep: SJCHGC01271 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 223

 Score = 32.7 bits (71), Expect = 2.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 283 HMPLPRHHHSGQGKINKYRTTVLDIGSITSITXP 384
           + PLPRHHH+    + + + T   I S T++  P
Sbjct: 65  NQPLPRHHHNDPNHLQQQKRTHTPINSTTNLNTP 98


>UniRef50_Q84709 Cluster: Putative uncharacterized protein; n=1; Pea
           enation mosaic virus-1|Rep: Putative uncharacterized
           protein - Pea enation mosaic virus (PEMV)
          Length = 303

 Score = 31.5 bits (68), Expect = 5.8
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +1

Query: 190 CSERFPCCVEKVNLFYFIPPLXEMPTNSSVIHMPLPRHHHSGQGKINKYRTTVLD 354
           C  RFP  VE V   Y++P L  +      +++ L R +    G+ ++ R  VL+
Sbjct: 154 CEARFPPIVEGVGSAYYVPTLLGLTHQDPRLYLALRRRNLDLSGEPHRVRPGVLE 208


>UniRef50_Q7NZ44 Cluster: Multidrug resistence transmembrane
           protein; n=1; Chromobacterium violaceum|Rep: Multidrug
           resistence transmembrane protein - Chromobacterium
           violaceum
          Length = 504

 Score = 31.1 bits (67), Expect = 7.7
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 339 SVFVNFALAAVMMSRQRHMYYGRVCRHLS*RWYKVKKIDFLHTTRK 202
           SV    ALA+V M  +  ++Y R+  H S  W   + +D LH  R+
Sbjct: 409 SVSAGVALASVFMQARNALHYSRLSEHFS--WNSPQFLDSLHQLRQ 452


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 288,086,530
Number of Sequences: 1657284
Number of extensions: 4372093
Number of successful extensions: 8763
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8763
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 15718494179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)