Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_F17
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces...    28   0.44 
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    25   5.5  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    24   9.6  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    24   9.6  

>SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 108

 Score = 28.3 bits (60), Expect = 0.44
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +3

Query: 219 ESQSFLLYTTAXRDAYKLFRNTYASASTSSQR 314
           ESQ+  +Y+ A  ++ K  ++T+AS  TSSQ+
Sbjct: 60  ESQASGIYSQAEAESKKQVQDTFASIETSSQK 91


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 289 PLPRHHHSGQGKINKYRTTV 348
           P+PR  HS Q ++++ RT V
Sbjct: 187 PVPRREHSSQFQVSEKRTLV 206


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 354 VKDSSSVFVNFALAAVMMSRQRHMYYGRVCRHL 256
           +K    V V   LA  ++S Q H Y   VCR +
Sbjct: 75  LKKIGPVTVMQFLACFLLSSQNHAYAWSVCRQI 107


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +3

Query: 3   NYNLNLGEXRLFKLSLNRNTYY--CQSRNEKCLXTDFNS*IKLXD 131
           N   +L +  LF        YY  CQ + EKCL  D    I+L D
Sbjct: 63  NIITSLKKDNLFSKDGLLYAYYELCQEKFEKCLKEDDEEWIELWD 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,240,227
Number of Sequences: 5004
Number of extensions: 19137
Number of successful extensions: 45
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)