Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_F17
         (386 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19153-4|CAA79548.1|  525|Caenorhabditis elegans Hypothetical pr...    29   0.86 
L12018-2|AAK68341.1|  525|Caenorhabditis elegans G protein regul...    29   0.86 

>Z19153-4|CAA79548.1|  525|Caenorhabditis elegans Hypothetical
           protein C38C10.4 protein.
          Length = 525

 Score = 29.5 bits (63), Expect = 0.86
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = -3

Query: 288 HMYYGRVCRHLS 253
           +MYYGRVCRHL+
Sbjct: 55  YMYYGRVCRHLN 66


>L12018-2|AAK68341.1|  525|Caenorhabditis elegans G protein
           regulator protein 1 protein.
          Length = 525

 Score = 29.5 bits (63), Expect = 0.86
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = -3

Query: 288 HMYYGRVCRHLS 253
           +MYYGRVCRHL+
Sbjct: 55  YMYYGRVCRHLN 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,861,169
Number of Sequences: 27780
Number of extensions: 110429
Number of successful extensions: 248
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)