Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_F10
         (471 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    22   3.3  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   3.3  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   5.7  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 143 DYPKLPDIGEDSKD 184
           D PK+ D+GED  +
Sbjct: 243 DKPKIEDVGEDEDE 256


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 161 DIGEDSKDPH 190
           D  EDSKDPH
Sbjct: 20  DNSEDSKDPH 29


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 236 LHATAXIFGGDRCDISIRRRFSLLH 310
           +H     F  D+C    RRR  L+H
Sbjct: 240 IHTNEKPFECDKCRGRFRRRHHLVH 264


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,123
Number of Sequences: 336
Number of extensions: 1907
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10931752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)