Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_F10
         (471 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    28   0.62 
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    25   5.8  
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     25   5.8  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   7.7  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    25   7.7  

>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 28.3 bits (60), Expect = 0.62
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 224 NSXSIPGYHKDNEDPWSPHQYQVASDNHHS 135
           N   I  +HKD E    PH Y +AS  +H+
Sbjct: 116 NDNLIKHFHKDPEAAKVPHLYSIASSCYHA 145


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = -2

Query: 416 CPGIXLAVTGL 384
           CPGI LAVTGL
Sbjct: 38  CPGIYLAVTGL 48


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 20  ELPVTXLALYPKTPEERAAAAKKYGMTVXEYTPYPE 127
           +LP T    + K  E  + A K    TV E  PYP+
Sbjct: 193 QLPKTSAVSHQKPHEAPSTAVKAPTATVAENEPYPK 228


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 146  YPKLPDIGEDSKDPHYPYDNPELXRNFNEPLHA 244
            YP  P +  D        +NP+  RNF +P+ A
Sbjct: 1950 YPVFPWVIADYTSKELDLNNPKTYRNFCKPMGA 1982


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 32  TXLALYPKTPEERAAAAKKYGMTVXEYTPYPEDMGYGDYPKLP 160
           T L +   T +  AA +KK G+T     PY  +  + +   +P
Sbjct: 364 TSLKILQSTGDFSAATSKKSGLTKKTNIPYSPNSNHEEINSIP 406


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,716,332
Number of Sequences: 5004
Number of extensions: 30900
Number of successful extensions: 74
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)