Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_F10
         (471 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50358| Best HMM Match : DSL (HMM E-Value=6.2e-13)                   28   3.4  
SB_53696| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_3581| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.9  
SB_54| Best HMM Match : Actin (HMM E-Value=0)                          27   7.8  

>SB_50358| Best HMM Match : DSL (HMM E-Value=6.2e-13)
          Length = 557

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +2

Query: 143 DYPK-LPDIGEDSKDP--HYPYDNPELXRNFNEPLHATAXIF 259
           D+PK +P    D   P  H P D+P++  +F+ P+ A   +F
Sbjct: 301 DHPKVIPHTPTDHPKPVPHTPTDHPKVVESFDVPVEAVRRLF 342


>SB_53696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 50  PKTPEERAAAAKKYGMTVXEYTPYPEDMGYGDYPKLPDIGE 172
           P + +E AA++   G+     TP P+D     + K+PDIGE
Sbjct: 9   PLSGDEMAASS---GLQARADTPMPQDSSKAFHIKVPDIGE 46


>SB_3581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 13/53 (24%)
 Frame = +2

Query: 110 YTPYPEDMGYGDYPKLPDIGEDS--------KDPHYPYD-----NPELXRNFN 229
           + P+ +DM    YPK P++ ED         +  H+ +D     NP L ++FN
Sbjct: 349 FLPFADDMRKLKYPKKPEVSEDQIEKAQKIIRKLHFTFDSTSFENPTLQKHFN 401


>SB_54| Best HMM Match : Actin (HMM E-Value=0)
          Length = 2486

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -2

Query: 224 NSXSIPGYHKDNEDP-WSPHQYQVASDNHHSPYLQDRE 114
           NS  + GY   NE   WS  Q +  S NH SP  ++ E
Sbjct: 485 NSPQMNGYSSVNEPLYWSIDQNEPTSSNHTSPLSRNHE 522


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,805,332
Number of Sequences: 59808
Number of extensions: 238114
Number of successful extensions: 520
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)