Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_F09
(450 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc... 67 1e-12
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch... 66 2e-12
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 29 0.25
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 28 0.76
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ... 27 1.0
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 27 1.3
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c... 27 1.8
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 26 3.1
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc... 25 4.1
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 25 4.1
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 25 5.4
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 25 5.4
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 25 7.1
>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
L36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 99
Score = 66.9 bits (156), Expect = 1e-12
Identities = 34/61 (55%), Positives = 43/61 (70%)
Frame = +1
Query: 151 SLSRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQM 330
S R +VREV G A YE+R MEL++ S+DKRA K K+RLGT RAK K EEL++V+
Sbjct: 36 SFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSS 95
Query: 331 R 333
R
Sbjct: 96 R 96
>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
L36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 99
Score = 66.1 bits (154), Expect = 2e-12
Identities = 33/58 (56%), Positives = 42/58 (72%)
Frame = +1
Query: 160 RDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 333
R +VREV G A YE+R MEL++ S+DKRA K K+RLGT RAK K EEL++V+ R
Sbjct: 39 RSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 29.5 bits (63), Expect = 0.25
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 148 PSLSRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK-RKREELSNVLA 324
PSL+ + ++ HA ++ L+VSKD KRR+ THI + +R LS V
Sbjct: 1111 PSLTESCI--LINHADILSSILDYLQVSKD-------KRRMATHILGQINQRLTLSQVRN 1161
Query: 325 QMR 333
Q+R
Sbjct: 1162 QLR 1164
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 27.9 bits (59), Expect = 0.76
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -1
Query: 360 MVMSLGGCLPHLSEHVAKFFTLPLGADVCAQSSLQELQSTLV 235
+V SL G L + A+FFT PL ++VCA + + + ++
Sbjct: 544 IVKSLNGEYIALEKIEAQFFTSPLVSNVCAYADVNHAKPVVI 585
>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 27.5 bits (58), Expect = 1.0
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 296 SVKNLATCSLR*GRQPPRLITITI 367
SVKNL SL+ PPRLIT+ +
Sbjct: 421 SVKNLKLLSLKYDVTPPRLITVCV 444
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 990
Score = 27.1 bits (57), Expect = 1.3
Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
Frame = +3
Query: 168 STRSCRTRSI*EEGY---GVT*GVKRQACSEVLEATI 269
+TR+C T+S+ EEG+ V+ +KR+ +++L+A I
Sbjct: 928 ATRACLTQSLEEEGFPSRNVSNEIKRRFLTDLLKARI 964
>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1077
Score = 26.6 bits (56), Expect = 1.8
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 112 GQLD*RVFKRNTPSLSRDLVREVVGHAQYEKRA 210
G +D +V++ P LSR EVVGH ++++ A
Sbjct: 61 GFVDLKVYR--VPDLSRPSFNEVVGHKKFDETA 91
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 3.1
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +1
Query: 166 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRL----GTHIRAKRK 297
++RE +G + K + ++ K ALKF+ R+L H+R +R+
Sbjct: 35 IIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVERE 82
>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
scaffold protein Isu1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 192
Score = 25.4 bits (53), Expect = 4.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 111 RPARLKGLQTKHSKFVP 161
RPA L+ L+T SKFVP
Sbjct: 27 RPANLQFLKTNSSKFVP 43
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 25.4 bits (53), Expect = 4.1
Identities = 13/39 (33%), Positives = 27/39 (69%)
Frame = +1
Query: 214 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQM 330
+LLK ++ + K K+RL +I K K+EE+++++A++
Sbjct: 75 QLLKENEGSISSK-KKKRLDKYIENKLKKEEVASLIAKL 112
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 25.0 bits (52), Expect = 5.4
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -1
Query: 381 FIYHLMVMVMSLGGCLPHLSEHVAKFFTLPLGA-DVCAQSSLQELQSTLVF*HLK*LHSP 205
++ M + +GG + SEHV K F L V ++ ++ S + LK + S
Sbjct: 116 YLSKYMELSKKIGGLIAEQSEHVEKAFNLLRQVLSVALKAQKPDMDSPELLEFLKPIQSE 175
Query: 204 LLILS 190
LL ++
Sbjct: 176 LLTIT 180
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 25.0 bits (52), Expect = 5.4
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = -2
Query: 239 LSFDTLSNSIALFSY*ACPTTS 174
+S+D+LS+ +++ S+ CP T+
Sbjct: 79 MSYDSLSDDVSVLSFLDCPLTT 100
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 24.6 bits (51), Expect = 7.1
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +3
Query: 78 RKGITDKAIRIRPARLKGLQTKHSKFVP*FSTRS 179
RKG +AI L L KH+K VP S RS
Sbjct: 424 RKGDFSQAIEEFTNSLSQLPAKHTKRVPLLSNRS 457
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,433,826
Number of Sequences: 5004
Number of extensions: 25267
Number of successful extensions: 77
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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