Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_F09
(450 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0) 96 1e-20
SB_52466| Best HMM Match : Cation_ATPase_C (HMM E-Value=6.7e-12) 29 1.3
SB_47280| Best HMM Match : DUF655 (HMM E-Value=2.2) 29 1.8
SB_3105| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_45611| Best HMM Match : p450 (HMM E-Value=0) 28 3.1
SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_14664| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_39353| Best HMM Match : 7tm_3 (HMM E-Value=3.2e-09) 27 9.5
SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0) 27 9.5
>SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0)
Length = 100
Score = 96.3 bits (229), Expect = 1e-20
Identities = 44/59 (74%), Positives = 52/59 (88%)
Frame = +1
Query: 160 RDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 336
RD+VREVVG A YEKR MELL++ KDKRALKF K+RLGTH+R KRKREE+++VLA MRK
Sbjct: 35 RDVVREVVGFAPYEKRVMELLRIGKDKRALKFCKKRLGTHVRGKRKREEITSVLAAMRK 93
Score = 29.9 bits (64), Expect = 1.0
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 27 IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFV 158
+AVGL+KGHK TK + +P+R KG K KFV
Sbjct: 1 MAVGLQKGHKVTK----------NVTKPKPSRRKGASNKRVKFV 34
>SB_52466| Best HMM Match : Cation_ATPase_C (HMM E-Value=6.7e-12)
Length = 573
Score = 29.5 bits (63), Expect = 1.3
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 133 FKRNTPSLSRDLVREVVGHAQYE 201
+ RN P +SR ++R V+GHA Y+
Sbjct: 269 YGRNKPLISRAVLRNVIGHAIYQ 291
>SB_47280| Best HMM Match : DUF655 (HMM E-Value=2.2)
Length = 508
Score = 29.1 bits (62), Expect = 1.8
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 136 KRNTPSLSRDLV---REVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREE 306
K+ PSLSR + + GH+ + A K +K ALK + LG I+ +R EE
Sbjct: 204 KKEIPSLSRKRQTPSKRLFGHSN-DNNASLFTKTTKTINALKESSKALGDLIKNRRSSEE 262
Query: 307 LSN 315
+ +
Sbjct: 263 IDD 265
>SB_3105| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 28.7 bits (61), Expect = 2.3
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 33 VGLRKGHKTTKISAGRKGITDK-AIRIRPARLKGLQTKHSKFVP*FSTRSCRTRS 194
V +K H + A K TD+ +I+ +RL L +H K P + TR+C ++
Sbjct: 376 VDTKKLHPLYETHACAKKTTDRYEFKIQISRLGNLWCRHEKSHPQYETRACAKKT 430
>SB_45611| Best HMM Match : p450 (HMM E-Value=0)
Length = 847
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = +1
Query: 229 SKDKRALKFLKRRLGTHIRAKRKREELSN 315
+K RALKFLK RL +R KR E L N
Sbjct: 59 NKSPRALKFLKTRL-QDLRKKRDSETLRN 86
>SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 27.5 bits (58), Expect = 5.4
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +1
Query: 166 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNV 318
++ E GH Y+K L KVS+ K A + L G H K++ L V
Sbjct: 17 ILNETAGHGSYKKEHRGLRKVSR-KHAQRILDETAG-HASYKKEHRGLRKV 65
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 166 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKR 300
++ E GH Y+K L KVS+ K A + L G + K R
Sbjct: 73 IIDETAGHGSYKKEYRGLRKVSR-KHARRILDETAGHNTYKKEHR 116
>SB_14664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 61
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/45 (26%), Positives = 27/45 (60%)
Frame = +1
Query: 172 REVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREE 306
RE+ + + + E++K+ K K++ K +K++ + K+K+EE
Sbjct: 3 REINQKDKKQIKKEEIIKIKKKKKSKKKIKKKKKKKKKKKKKKEE 47
>SB_39353| Best HMM Match : 7tm_3 (HMM E-Value=3.2e-09)
Length = 836
Score = 26.6 bits (56), Expect = 9.5
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = -2
Query: 275 VPNRRFKNFRARLSFDTLSNSIALFSY*ACPTTSRTK-SRDKLGVFRLKTL*SSWPNSDG 99
V ++ K+F RL + + LF+ A T+ SR KL SWPN+
Sbjct: 177 VSEQQLKDFVTRLDAERNFTVVVLFTAHAITRRLLTEASRQKLTGMTWVMGQRSWPNTAP 236
Query: 98 FVCDTLAASGYF 63
+AA G F
Sbjct: 237 IALPNMAAQGMF 248
>SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 2682
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 127 FSLAGLILMALSVIPLRPADILVVLWPFRRPTAISKA 17
FS A + L+V+ + + I+V LW +RP A S +
Sbjct: 211 FSFAFFYAIPLAVVIVLYSAIMVTLWMHKRPGAFSSS 247
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,148,292
Number of Sequences: 59808
Number of extensions: 206902
Number of successful extensions: 550
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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