Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_F09
         (450 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S ...    86   1e-17
At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S ...    86   1e-17
At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)            85   2e-17
At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S ...    62   1e-10

>At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S
           ribosomal protein L36, Arabidopsis thaliana,
           EMBL:AC004684
          Length = 108

 Score = 85.8 bits (203), Expect = 1e-17
 Identities = 41/58 (70%), Positives = 48/58 (82%)
 Frame = +1

Query: 160 RDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 333
           R+L++EV G A YEKR  ELLKV KDKRALK  KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 40  RNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 97


>At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 112

 Score = 85.8 bits (203), Expect = 1e-17
 Identities = 41/58 (70%), Positives = 48/58 (82%)
 Frame = +1

Query: 160 RDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 333
           R+L++EV G A YEKR  ELLKV KDKRALK  KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 44  RNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101


>At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)
          Length = 113

 Score = 85.4 bits (202), Expect = 2e-17
 Identities = 42/58 (72%), Positives = 47/58 (81%)
 Frame = +1

Query: 160 RDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 333
           R L+REV G A YEKR  ELLKV KDKRALK  KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 44  RKLIREVAGMAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101


>At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 103

 Score = 62.5 bits (145), Expect = 1e-10
 Identities = 34/58 (58%), Positives = 42/58 (72%)
 Frame = +1

Query: 160 RDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 333
           R+L++EV G A YEKR  ELLKV+K         R+LGTH RAKRKREE+S+VL +MR
Sbjct: 44  RNLIKEVAGQAPYEKRITELLKVAK---------RKLGTHKRAKRKREEMSSVLRKMR 92


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,619,207
Number of Sequences: 28952
Number of extensions: 135859
Number of successful extensions: 363
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)