Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_F08
         (651 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    65   5e-13
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           26   0.31 
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    24   1.2  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    24   1.2  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    24   1.2  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    21   6.7  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 64.9 bits (151), Expect = 5e-13
 Identities = 32/67 (47%), Positives = 43/67 (64%)
 Frame = +3

Query: 447 GETNKPVTYVPPEPTNDETEIFXSTISSGINFDKFDHIAXKVSGENPPRPIESFETANLX 626
           GE  K   Y+PPE  N E ++F S I++G+NF K D I  KV+G + P PI SFET+ L 
Sbjct: 108 GEEKKREFYIPPEVENVE-DLFTSGITTGVNFMKLDEIEVKVTGNDAPPPITSFETSGLR 166

Query: 627 KYVLHNV 647
            ++L NV
Sbjct: 167 PHLLENV 173


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +3

Query: 105 PPPPLQNHDSVXEGHSLSRGRGFPSFNEDDEK 200
           P P +  H+        +RG GFP  + D+++
Sbjct: 332 PRPNIDRHEVTRPAAPANRGNGFPKRSSDEQQ 363


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 107 WHHNSFTGIIPVIIHYNGIFYFQLDFDNVKSP 12
           +HH +     P+I    G+ Y  LD+ N   P
Sbjct: 65  YHHQTIPQDNPIINTETGLSYTNLDYGNSNFP 96


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 107 WHHNSFTGIIPVIIHYNGIFYFQLDFDNVKSP 12
           +HH +     P+I    G+ Y  LD+ N   P
Sbjct: 65  YHHQTIPQDNPIINTETGLSYTNLDYGNSNFP 96


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 107 WHHNSFTGIIPVIIHYNGIFYFQLDFDNVKSP 12
           +HH +     P+I    G+ Y  LD+ N   P
Sbjct: 65  YHHQTIPQDNPIINTETGLSYTNLDYGNSNFP 96


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 174 PSFNEDDEKENGYG 215
           PS N+D    NGYG
Sbjct: 365 PSINDDGTCGNGYG 378


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,538
Number of Sequences: 336
Number of extensions: 1705
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)