Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_F08
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    36   0.005
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    28   1.0  
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    26   4.1  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    26   5.4  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    25   7.2  
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    25   7.2  

>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +3

Query: 522 ISSGINFDKFDHIAXKVSGENPPRPIESFETANLXKYVLHNV 647
           +S+GINF+K+D I  +VSG     P+  F +  L  ++L N+
Sbjct: 144 VSTGINFEKYDDIPVEVSG-GDIEPVNEFTSPPLNSHLLQNI 184


>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 570 VSGENPPRPIESFETANLXKYVLHNV 647
           V G N P+P+ +FE A    YVL  V
Sbjct: 112 VHGLNVPKPVTTFEEAGFPNYVLKEV 137


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +3

Query: 414 NDYEDNEIXENGETNKPVTYVPPEPTNDETEI---FXSTISSGINFDKFDHIAXKVSGE 581
           N  ++ EI ++ E+    T V  EPT +ETE      +++  G   DK    A   SG+
Sbjct: 140 NTVKEEEIEKDDESATTETPVKEEPTGEETEADHEEKASVDHGNFSDKTTSEASSASGD 198


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 441 ENGETNKPVTYVPPEPTNDETEIFXSTISSGINFDK 548
           E+G  +  +T   P+P  D T  F S  S+GI  DK
Sbjct: 698 EDGLKSVNLTEEAPKPEVDSTPRFPSFTSNGITTDK 733


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 447 GETNKPVTYVPPEPTNDETEI 509
           G T+KP++ VP  PT  E +I
Sbjct: 355 GTTDKPLSSVPTNPTPSEDDI 375


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -1

Query: 510 RFPSHHLLVLEAHRLPACSFPRFP 439
           R PS     LE H LP  S P FP
Sbjct: 146 RTPSRSSNTLELHSLPISSSPSFP 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,827,485
Number of Sequences: 5004
Number of extensions: 29383
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)