Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_F08
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)              89   2e-18
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)                89   2e-18
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   2e-07
SB_14281| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_51564| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)                      29   4.3  
SB_35207| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_32820| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 42/69 (60%), Positives = 49/69 (71%)
 Frame = +3

Query: 441 ENGETNKPVTYVPPEPTNDETEIFXSTISSGINFDKFDHIAXKVSGENPPRPIESFETAN 620
           E+G+  KPVTYVPP PT DE E+F STI  GINF+K+D I   VSG NP R I SFE AN
Sbjct: 658 EDGDRPKPVTYVPPTPTEDEEEMFRSTIQQGINFEKYDQIEVLVSGNNPVRHINSFEEAN 717

Query: 621 LXKYVLHNV 647
           L +  L+NV
Sbjct: 718 LYEAFLNNV 726


>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
          Length = 185

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 42/69 (60%), Positives = 49/69 (71%)
 Frame = +3

Query: 441 ENGETNKPVTYVPPEPTNDETEIFXSTISSGINFDKFDHIAXKVSGENPPRPIESFETAN 620
           E+G+  KPVTYVPP PT DE E+F STI  GINF+K+D I   VSG NP R I SFE AN
Sbjct: 81  EDGDRPKPVTYVPPTPTEDEEEMFRSTIQQGINFEKYDQIEVLVSGNNPVRHINSFEEAN 140

Query: 621 LXKYVLHNV 647
           L +  L+NV
Sbjct: 141 LYEAFLNNV 149


>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 797

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 23/62 (37%), Positives = 36/62 (58%)
 Frame = +3

Query: 462 PVTYVPPEPTNDETEIFXSTISSGINFDKFDHIAXKVSGENPPRPIESFETANLXKYVLH 641
           P+TY+PPE  ++   +F     +GI FD +++I  KVSGEN P  I SF      + ++ 
Sbjct: 433 PITYIPPELPDNIDLLFQDAPHTGIKFDNYENIPSKVSGENQPPKITSFNELPFGEQLMA 492

Query: 642 NV 647
           N+
Sbjct: 493 NI 494


>SB_14281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 34

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +3

Query: 504 EIFXSTISSGINFDKFDHIAXKVSGENPPRPIE 602
           ++F S  ++GINF+K+D I  + +G+  P+ IE
Sbjct: 2   DLFASH-NTGINFEKYDDIPVEATGQECPKNIE 33


>SB_51564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 51  NTIVMDDDWDDSCEAVVVPPPPLQNHDSVXEGHSLSR 161
           N  + D D+  + E V+ PPPPL+ H    E + L R
Sbjct: 125 NRSIHDHDYHWAIENVIPPPPPLEGHVE-RESYELGR 160


>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
          Length = 1291

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 423 EDNEIXENGETNKPVTYVPPEPTNDET 503
           E++E+   G+T+  +T+ PPEP+  E+
Sbjct: 348 EEDELLYGGDTSLTLTFEPPEPSKAES 374


>SB_35207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 39

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 423 EDNEIXENGETNKPVTYVPPEPTNDE 500
           E++E+   G+T+  +T+ PPEP+  E
Sbjct: 13  EEDELLYGGDTSLTLTFEPPEPSKAE 38


>SB_32820| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 170

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 599 DRSRRILTTDFXCNMVKLVKVNTRAYSTXKDFRLIIC 489
           D    I+     CN +KLV V  ++YST KD +  +C
Sbjct: 98  DMQAGIVGPPLTCNYIKLVDVPEKSYST-KDLKGEVC 133


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,643,617
Number of Sequences: 59808
Number of extensions: 229755
Number of successful extensions: 710
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)