Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_F08
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024810-3|AAU20831.1|  660|Caenorhabditis elegans Vasa- and bel...    46   2e-05
AC024810-1|AAF60764.1|  641|Caenorhabditis elegans Vasa- and bel...    46   2e-05
AC024810-2|AAK68520.1|  644|Caenorhabditis elegans Vasa- and bel...    45   5e-05
AC024859-14|AAY43989.1|  643|Caenorhabditis elegans Hypothetical...    43   2e-04
Z82275-3|CAL44962.1|  478|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z82265-8|CAB05169.2|  478|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    28   6.6  

>AC024810-3|AAU20831.1|  660|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform c protein.
          Length = 660

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
 Frame = +3

Query: 414 NDYED--NEIXENGETNKPVTYVPPEPTNDETEIFXSTISSGINFDKFDHIAXKVSGENP 587
           N++ D  N    NG  +      P E +  E+ +F  T  SGINFDK+++I  +VSG++ 
Sbjct: 78  NNFADSGNGFNNNGAESNQWGGAPAEYS--ESNLFHRT-DSGINFDKYENIPVEVSGDSV 134

Query: 588 PRPIESFETANLXKYVLHNV 647
           P  IE F  A     V+ NV
Sbjct: 135 PAAIEHFNEAGFGPAVMENV 154


>AC024810-1|AAF60764.1|  641|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform a protein.
          Length = 641

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
 Frame = +3

Query: 414 NDYED--NEIXENGETNKPVTYVPPEPTNDETEIFXSTISSGINFDKFDHIAXKVSGENP 587
           N++ D  N    NG  +      P E +  E+ +F  T  SGINFDK+++I  +VSG++ 
Sbjct: 59  NNFADSGNGFNNNGAESNQWGGAPAEYS--ESNLFHRT-DSGINFDKYENIPVEVSGDSV 115

Query: 588 PRPIESFETANLXKYVLHNV 647
           P  IE F  A     V+ NV
Sbjct: 116 PAAIEHFNEAGFGPAVMENV 135


>AC024810-2|AAK68520.1|  644|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform b protein.
          Length = 644

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 22/50 (44%), Positives = 31/50 (62%)
 Frame = +3

Query: 498 ETEIFXSTISSGINFDKFDHIAXKVSGENPPRPIESFETANLXKYVLHNV 647
           E+ +F  T  SGINFDK+++I  +VSG++ P  IE F  A     V+ NV
Sbjct: 90  ESNLFHRT-DSGINFDKYENIPVEVSGDSVPAAIEHFNEAGFGPAVMENV 138


>AC024859-14|AAY43989.1|  643|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.19 protein.
          Length = 643

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 18/50 (36%), Positives = 32/50 (64%)
 Frame = +3

Query: 498 ETEIFXSTISSGINFDKFDHIAXKVSGENPPRPIESFETANLXKYVLHNV 647
           E E+F   +S GINFDK++ I  + +G++ P+PI  F   +L +++  N+
Sbjct: 133 EQELFSGQLS-GINFDKYEEIPVEATGDDVPQPISLFSDLSLHEWIEENI 181


>Z82275-3|CAL44962.1|  478|Caenorhabditis elegans Hypothetical
           protein F02H6.2 protein.
          Length = 478

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/66 (24%), Positives = 28/66 (42%)
 Frame = +3

Query: 408 DTNDYEDNEIXENGETNKPVTYVPPEPTNDETEIFXSTISSGINFDKFDHIAXKVSGENP 587
           +  ++ED E+ E  +  +         T+DE E F   I S I+ ++   I         
Sbjct: 40  NVGEFEDEEVDEEVDEEEDHAEDEERDTDDEVEGFDKEIVSDIDDEEVPQIDFGYDKNGD 99

Query: 588 PRPIES 605
           P+ +ES
Sbjct: 100 PQQLES 105


>Z82265-8|CAB05169.2|  478|Caenorhabditis elegans Hypothetical
           protein F02H6.2 protein.
          Length = 478

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/66 (24%), Positives = 28/66 (42%)
 Frame = +3

Query: 408 DTNDYEDNEIXENGETNKPVTYVPPEPTNDETEIFXSTISSGINFDKFDHIAXKVSGENP 587
           +  ++ED E+ E  +  +         T+DE E F   I S I+ ++   I         
Sbjct: 40  NVGEFEDEEVDEEVDEEEDHAEDEERDTDDEVEGFDKEIVSDIDDEEVPQIDFGYDKNGD 99

Query: 588 PRPIES 605
           P+ +ES
Sbjct: 100 PQQLES 105


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
            protein Y32H12A.8 protein.
          Length = 3901

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 66   DDDWDDSCEAVVVPPPPLQNHDSVXEGH-SLSRGRGFPSFNEDDEKE 203
            D+D  D  +  + PPPP +N   V E     SR R      E+DE E
Sbjct: 1002 DEDRTDLVKYYLNPPPPPKNEVRVQEEQLEGSRKRKLEQIQEEDEDE 1048


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,259,229
Number of Sequences: 27780
Number of extensions: 172036
Number of successful extensions: 572
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)