Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_F08
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       76   3e-16
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 76.2 bits (179), Expect = 3e-16
 Identities = 38/76 (50%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
 Frame = +3

Query: 423 EDNEIXENGETNKPVT-YVPPEPTNDETEIFXSTISSGINFDKFDHIAXKVSGENPPRPI 599
           EDN+     E  KP   Y+PPE  NDE  +F + +  GINFDK+D+I   VSG+N P+PI
Sbjct: 139 EDND---EEEAQKPKEQYIPPELPNDEKSLFENGVEIGINFDKYDNIQVNVSGDNVPQPI 195

Query: 600 ESFETANLXKYVLHNV 647
           ESFE A L   VL N+
Sbjct: 196 ESFEAAGLRNIVLDNI 211


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 105  PPPPLQNHD 131
            PPPP +NHD
Sbjct: 1860 PPPPPRNHD 1868


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +3

Query: 555 HIAXKVSGENPPRPIESFETANLXKYVLHNVL 650
           H+A +++   PP+  ES   +++ K  L   L
Sbjct: 345 HVAKQMASPEPPKSSESSTGSSIPKLNLSTAL 376


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 69  DDWDDSCEAVVVPPPPL 119
           D+ +  C+    PPPPL
Sbjct: 326 DNVEIKCDVTGTPPPPL 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,899
Number of Sequences: 438
Number of extensions: 2144
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)