Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_F08
(651 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 34 0.094
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 34 0.094
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 34 0.094
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 31 0.88
At4g04390.1 68417.m00627 Ulp1 protease family protein contains P... 28 4.7
At5g47460.1 68418.m05861 pentatricopeptide (PPR) repeat-containi... 27 8.2
At3g14270.1 68416.m01806 phosphatidylinositol-4-phosphate 5-kina... 27 8.2
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 33.9 bits (74), Expect = 0.094
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +3
Query: 486 PTNDETE---IFXSTISSGINFDKFDHIAXKVSGENPPRPIESFETANL 623
P D+ E +F ++GINFD ++ I + SG + P P+ +F +L
Sbjct: 110 PFGDDAELEPVFTEQENTGINFDAYEDIPVETSGGDVPPPVNTFADIDL 158
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 33.9 bits (74), Expect = 0.094
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +3
Query: 486 PTNDETE---IFXSTISSGINFDKFDHIAXKVSGENPPRPIESFETANL 623
P D+ E +F ++GINFD ++ I + SG + P P+ +F +L
Sbjct: 110 PFGDDAELEPVFTEQENTGINFDAYEDIPVETSGGDVPPPVNTFADIDL 158
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 33.9 bits (74), Expect = 0.094
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +3
Query: 492 NDETE---IFXSTISSGINFDKFDHIAXKVSGENPPRPIESFETANLXKYVLHNV 647
ND++E F ++ INFD ++ I + SG+N P P+ +F +L + + N+
Sbjct: 120 NDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 30.7 bits (66), Expect = 0.88
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 534 INFDKFDHIAXKVSGENPPRPIESFETANLXKYVLHNV 647
INF+ ++ I + SG+N P P+ +F +L + + N+
Sbjct: 124 INFEAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 161
>At4g04390.1 68417.m00627 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 963
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +3
Query: 48 KNTIVMDDDWDDSCEAVVVPPPPLQNHDSVXEGHSLSRGRGFPSFNEDDEKENG 209
+N + D DD E +VPP Q S G +RGR P DD +G
Sbjct: 460 RNNPFPNSDGDDDFE--IVPPLRSQTRRSTRLGKQANRGRQVPEGARDDNFVDG 511
>At5g47460.1 68418.m05861 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 576
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 471 YVPPEPTNDETEIFXSTISSGINFDKF 551
YV E + + TE F SSG+ FD++
Sbjct: 295 YVNSEKSGEATEFFTKMHSSGVRFDEY 321
>At3g14270.1 68416.m01806 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to SP|Q9Z1T6 FYVE
finger-containing phosphoinositide kinase (EC 2.7.1.68)
(1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
(PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF01363: FYVE zinc finger, PF00118:
TCP-1/cpn60 chaperonin family
Length = 1791
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 417 DYEDNEIXENGE-TNKPVTYVPPEPTNDETE 506
D D+++ E + N + +VPPEP N+E E
Sbjct: 300 DISDDQVVEPVDFENNGLLWVPPEPENEEDE 330
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,645,209
Number of Sequences: 28952
Number of extensions: 161466
Number of successful extensions: 535
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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