Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_F07
         (514 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P08570 Cluster: 60S acidic ribosomal protein P1; n=15; ...    68   1e-10
UniRef50_P05386 Cluster: 60S acidic ribosomal protein P1; n=156;...    55   8e-07
UniRef50_Q16FG5 Cluster: Acidic ribosomal protein P1, putative; ...    53   4e-06
UniRef50_Q16VR0 Cluster: Putative uncharacterized protein; n=1; ...    52   1e-05
UniRef50_UPI0000F2B32D Cluster: PREDICTED: hypothetical protein;...    48   2e-04
UniRef50_Q9FLV1 Cluster: 60s acidic ribosomal protein P1; n=1; A...    44   0.003
UniRef50_Q5CJB8 Cluster: Acidic ribosomal protein P1; n=3; Eimer...    42   0.006
UniRef50_Q5DBA6 Cluster: SJCHGC09468 protein; n=1; Schistosoma j...    42   0.011
UniRef50_Q0UPB2 Cluster: Putative uncharacterized protein; n=1; ...    36   0.54 
UniRef50_P50344 Cluster: 60S acidic ribosomal protein P1; n=14; ...    36   0.72 
UniRef50_Q9HFQ7 Cluster: 60S acidic ribosomal protein P1-A; n=11...    34   1.7  
UniRef50_A0DBJ7 Cluster: Chromosome undetermined scaffold_44, wh...    34   2.2  
UniRef50_UPI0000499C26 Cluster: 60S acidic ribosomal protein P1;...    33   2.9  
UniRef50_Q7XBP6 Cluster: Ubiquitin/ribosomal protein P1 fusion; ...    33   2.9  
UniRef50_Q17FT7 Cluster: Acidic ribosomal protein P1, putative; ...    33   3.8  
UniRef50_Q4N3J3 Cluster: 60S acidic ribosomal protein P1, putati...    32   6.7  
UniRef50_A7SVI3 Cluster: Predicted protein; n=1; Nematostella ve...    32   6.7  

>UniRef50_P08570 Cluster: 60S acidic ribosomal protein P1; n=15;
           Eukaryota|Rep: 60S acidic ribosomal protein P1 -
           Drosophila melanogaster (Fruit fly)
          Length = 112

 Score = 67.7 bits (158), Expect = 1e-10
 Identities = 31/35 (88%), Positives = 33/35 (94%)
 Frame = +2

Query: 131 LDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKAL 235
           +DDDVAVTGEKI+TILKAA V VEPYWPGLFAKAL
Sbjct: 17  VDDDVAVTGEKINTILKAANVEVEPYWPGLFAKAL 51



 Score = 33.1 bits (72), Expect = 3.8
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +3

Query: 228 KPCQGINVRDLITNIGSG 281
           K  +GINV+DLITNIGSG
Sbjct: 49  KALEGINVKDLITNIGSG 66


>UniRef50_P05386 Cluster: 60S acidic ribosomal protein P1; n=156;
           Eukaryota|Rep: 60S acidic ribosomal protein P1 - Homo
           sapiens (Human)
          Length = 114

 Score = 55.2 bits (127), Expect = 8e-07
 Identities = 23/34 (67%), Positives = 29/34 (85%)
 Frame = +2

Query: 134 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKAL 235
           DD+V VT +KI+ ++KAA V VEP+WPGLFAKAL
Sbjct: 18  DDEVTVTEDKINALIKAAGVNVEPFWPGLFAKAL 51


>UniRef50_Q16FG5 Cluster: Acidic ribosomal protein P1, putative;
           n=2; Aedes aegypti|Rep: Acidic ribosomal protein P1,
           putative - Aedes aegypti (Yellowfever mosquito)
          Length = 106

 Score = 52.8 bits (121), Expect = 4e-06
 Identities = 26/34 (76%), Positives = 27/34 (79%)
 Frame = +2

Query: 134 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKAL 235
           DDDVAVT EKISTI   A V +EPYWPGLF KAL
Sbjct: 28  DDDVAVTDEKISTI--QANVDIEPYWPGLFTKAL 59



 Score = 33.1 bits (72), Expect = 3.8
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +3

Query: 228 KPCQGINVRDLITNIGSG 281
           K  +GINV+DLITNIGSG
Sbjct: 57  KALEGINVKDLITNIGSG 74


>UniRef50_Q16VR0 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 88

 Score = 51.6 bits (118), Expect = 1e-05
 Identities = 28/35 (80%), Positives = 28/35 (80%)
 Frame = +2

Query: 131 LDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKAL 235
           L DDVAVT EKISTILKAA   VEPYW  LFAKAL
Sbjct: 42  LVDDVAVTDEKISTILKAA--NVEPYWRALFAKAL 74


>UniRef50_UPI0000F2B32D Cluster: PREDICTED: hypothetical protein;
           n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
           protein - Monodelphis domestica
          Length = 103

 Score = 47.6 bits (108), Expect = 2e-04
 Identities = 20/34 (58%), Positives = 27/34 (79%)
 Frame = +2

Query: 134 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKAL 235
           +D V V  +KI+T +KAA + VEP+WPGLFAK+L
Sbjct: 31  NDKVMVMEDKINTPIKAAGINVEPFWPGLFAKSL 64


>UniRef50_Q9FLV1 Cluster: 60s acidic ribosomal protein P1; n=1;
           Arabidopsis thaliana|Rep: 60s acidic ribosomal protein
           P1 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 111

 Score = 43.6 bits (98), Expect = 0.003
 Identities = 18/32 (56%), Positives = 22/32 (68%)
 Frame = +2

Query: 134 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAK 229
           DD + +T E IS ++K A V VE YWP LFAK
Sbjct: 17  DDGIEITAENISKLVKTANVNVESYWPSLFAK 48


>UniRef50_Q5CJB8 Cluster: Acidic ribosomal protein P1; n=3;
           Eimeriorina|Rep: Acidic ribosomal protein P1 -
           Cryptosporidium hominis
          Length = 124

 Score = 42.3 bits (95), Expect = 0.006
 Identities = 20/34 (58%), Positives = 23/34 (67%)
 Frame = +2

Query: 134 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKAL 235
           D  V VT E I  I+ AA   VEPY+PGLFA+AL
Sbjct: 28  DGGVPVTSENIKKIISAAGGSVEPYFPGLFAQAL 61


>UniRef50_Q5DBA6 Cluster: SJCHGC09468 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC09468 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 116

 Score = 41.5 bits (93), Expect = 0.011
 Identities = 21/35 (60%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
 Frame = +2

Query: 134 DDDVAVTGEKISTILKAAAV-XVEPYWPGLFAKAL 235
           DDD+ VT +KI+TILKAA +  VE Y P LFA +L
Sbjct: 17  DDDIDVTADKINTILKAANIKFVESYLPNLFATSL 51


>UniRef50_Q0UPB2 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 114

 Score = 35.9 bits (79), Expect = 0.54
 Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 134 DDDVAVTGEKISTILKAAAVX-VEPYWPGLFAKAL 235
           DD   +T EK+  +L AA +  VEP W  LFAKAL
Sbjct: 18  DDATPITPEKLQVLLIAAGIEDVEPIWTTLFAKAL 52


>UniRef50_P50344 Cluster: 60S acidic ribosomal protein P1; n=14;
           Dikarya|Rep: 60S acidic ribosomal protein P1 -
           Cladosporium herbarum (Davidiella tassiana)
          Length = 110

 Score = 35.5 bits (78), Expect = 0.72
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +2

Query: 134 DDDVAVTGEKISTILKAAAV-XVEPYWPGLFAKAL 235
           D+ + +T +K+  ++ AA V  +EP W  LFAKAL
Sbjct: 17  DEGLEITADKLQALISAAKVPEIEPIWTSLFAKAL 51


>UniRef50_Q9HFQ7 Cluster: 60S acidic ribosomal protein P1-A; n=11;
           Eukaryota|Rep: 60S acidic ribosomal protein P1-A -
           Candida albicans (Yeast)
          Length = 106

 Score = 34.3 bits (75), Expect = 1.7
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +2

Query: 134 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKAL 235
           D +V +T EK+  ++  A V VE  W  LFAKAL
Sbjct: 16  DAEVEITSEKLLALVTKANVEVEGIWADLFAKAL 49


>UniRef50_A0DBJ7 Cluster: Chromosome undetermined scaffold_44, whole
           genome shotgun sequence; n=8; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_44,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 122

 Score = 33.9 bits (74), Expect = 2.2
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +2

Query: 134 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKAL 235
           +D+  +   K++ I+KAA + VEP W  +F KAL
Sbjct: 30  EDNQEINAAKLAQIIKAANLRVEPIWTKVFEKAL 63


>UniRef50_UPI0000499C26 Cluster: 60S acidic ribosomal protein P1;
           n=3; Entamoeba histolytica HM-1:IMSS|Rep: 60S acidic
           ribosomal protein P1 - Entamoeba histolytica HM-1:IMSS
          Length = 106

 Score = 33.5 bits (73), Expect = 2.9
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +2

Query: 149 VTGEKISTILKAAAVXVEPYWPGLFAKAL 235
           +T E I+T+L  A + VE +WP + AKAL
Sbjct: 26  ITAEHINTVLHHANIKVEGFWPIIMAKAL 54


>UniRef50_Q7XBP6 Cluster: Ubiquitin/ribosomal protein P1 fusion;
           n=3; Chlorarachniophyceae|Rep: Ubiquitin/ribosomal
           protein P1 fusion - Bigelowiella natans (Pedinomonas
           minutissima) (Chlorarachnion sp.(strain CCMP 621))
          Length = 221

 Score = 33.5 bits (73), Expect = 2.9
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 149 VTGEKISTILKAAAVXVEPYWPGLFAK 229
           +T E I+ +L A+ + V PYWP +FA+
Sbjct: 138 ITEENINKLLSASKIEVAPYWPKMFAE 164


>UniRef50_Q17FT7 Cluster: Acidic ribosomal protein P1, putative;
           n=1; Aedes aegypti|Rep: Acidic ribosomal protein P1,
           putative - Aedes aegypti (Yellowfever mosquito)
          Length = 88

 Score = 33.1 bits (72), Expect = 3.8
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = +2

Query: 185 AAVXVEPYWPGLFAKAL 235
           A V +EPYWP LFAKAL
Sbjct: 6   ANVDIEPYWPALFAKAL 22



 Score = 33.1 bits (72), Expect = 3.8
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +3

Query: 228 KPCQGINVRDLITNIGSG 281
           K  +GINV+DLITNIGSG
Sbjct: 20  KALEGINVKDLITNIGSG 37


>UniRef50_Q4N3J3 Cluster: 60S acidic ribosomal protein P1, putative;
           n=2; Theileria|Rep: 60S acidic ribosomal protein P1,
           putative - Theileria parva
          Length = 117

 Score = 32.3 bits (70), Expect = 6.7
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +2

Query: 134 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKAL 235
           DD + VT + I  ++KAA   ++P+ P LFA+AL
Sbjct: 28  DDGLDVTQDNILKLVKAAKGDMQPFTPMLFARAL 61


>UniRef50_A7SVI3 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 893

 Score = 32.3 bits (70), Expect = 6.7
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -3

Query: 263 DQVTDIDALARLWRTDLANMALHXQPPLSRWWKF 162
           + V DID   +LWR DLAN  L     LSR+  F
Sbjct: 52  EAVPDIDCCPQLWRIDLANNRLRSLEGLSRFAAF 85


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 379,151,024
Number of Sequences: 1657284
Number of extensions: 5938619
Number of successful extensions: 14109
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 13856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14102
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31364627325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)