Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_F07
         (514 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    40   3e-04
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    40   3e-04
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    38   9e-04
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    27   1.6  
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.8  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    25   8.8  

>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +2

Query: 134 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKAL 235
           D+ + +T +K+ ++ KAA V VEP W  +FAKAL
Sbjct: 17  DEGIEITSDKLLSLTKAANVDVEPIWATIFAKAL 50


>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +2

Query: 134 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKAL 235
           D+ + +T +K+ ++ KAA V VEP W  +FAKAL
Sbjct: 17  DEGIEITSDKLLSLTKAANVDVEPIWATIFAKAL 50


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 37.9 bits (84), Expect = 9e-04
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +2

Query: 134 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKAL 235
           D+ + +T +K+ ++ KA  V VEP W  +FAKAL
Sbjct: 17  DEGIEITSDKLLSLTKAGNVEVEPIWATIFAKAL 50


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -3

Query: 155 QLRQHHHQARMRAE*THXNSAFDTIFS-FERASCRRP*LKREQARLSSDXQR 3
           +LR    Q  +R +  H      TI +  ER SCRRP L  +  RL+   +R
Sbjct: 203 KLRLIKQQESLRHQVMHCQPHLRTIVNAVERMSCRRPKLVPQATRLTEVLER 254


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 49  GLRQLARSKLKMVSKAELXCVYSAL 123
           G+ QL    + ++SKA+L C Y  L
Sbjct: 159 GMLQLDMPHVNILSKADLLCTYGTL 183


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 268 LVIRSRTLMPWQGFGEQTWPIW 203
           L+  SRTL+  +   E+TWP W
Sbjct: 812 LICPSRTLIIDKACVEKTWPYW 833


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,546,499
Number of Sequences: 5004
Number of extensions: 23451
Number of successful extensions: 45
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)