Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_F07
         (514 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   5e-10
SB_2072| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.56 
SB_86| Best HMM Match : PGK (HMM E-Value=0)                            29   3.0  
SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)                       27   6.9  

>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 61.3 bits (142), Expect = 5e-10
 Identities = 25/37 (67%), Positives = 31/37 (83%)
 Frame = +2

Query: 134 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALPRH 244
           DDDVA+T +KI T++KAA + VEP+WPGLFAKAL  H
Sbjct: 18  DDDVAITADKIETLVKAAKINVEPFWPGLFAKALQGH 54



 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +1

Query: 82  MVSKAELXCVYSALIL 129
           M S +EL CVYSALIL
Sbjct: 1   MASTSELACVYSALIL 16


>SB_2072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -3

Query: 275 ADVGDQVTDIDALARLWRTDLANMALHXQPPLSRWWKFSHQ 153
           +DV D   D D    LW TDL + +   QPP  R W  +HQ
Sbjct: 101 SDVDDSDDDDDDDGLLWHTDLLS-SRQRQPPPERNWYQAHQ 140


>SB_86| Best HMM Match : PGK (HMM E-Value=0)
          Length = 445

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -3

Query: 188 PPLSRWWKFSHQLRQ--HHHQARMRAE*THXNSAFDTIFSFERASCRR 51
           PP  RWW++ H LRQ  H  Q + + + T         F +E  + R+
Sbjct: 394 PP--RWWRYRHVLRQMGHRRQGQSQIDVTEIPRPHALWFIYEHRNSRK 439


>SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)
          Length = 323

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = -3

Query: 245 DALARLWRTDLANMALHXQPPLSRWWKFSHQLRQHHHQARMRAE*TH 105
           + L  LWR      A H   PLS     S     HHHQ + + +  H
Sbjct: 74  ERLTGLWRECSCQTATHASAPLS---SSSSSSSHHHHQQQQQQQHRH 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,718,127
Number of Sequences: 59808
Number of extensions: 176901
Number of successful extensions: 399
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)