Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_F07
         (514 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)       47   9e-06
At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)...    47   9e-06
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)...    47   9e-06
At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)...    47   9e-06
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)...    47   9e-06
At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative     44   8e-05
At5g13690.1 68418.m01594 alpha-N-acetylglucosaminidase family / ...    28   3.2  
At1g36920.1 68414.m04598 hypothetical protein                          27   7.4  
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid...    27   9.8  

>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
          Length = 113

 Score = 46.8 bits (106), Expect = 9e-06
 Identities = 18/32 (56%), Positives = 26/32 (81%)
 Frame = +2

Query: 134 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAK 229
           D+ +A+T +KI+T++KAA V +E YWP LFAK
Sbjct: 18  DEGIAITADKIATLVKAAGVTIESYWPMLFAK 49


>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)
           similar to acidic ribosomal protein p1
          Length = 113

 Score = 46.8 bits (106), Expect = 9e-06
 Identities = 18/32 (56%), Positives = 26/32 (81%)
 Frame = +2

Query: 134 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAK 229
           D+ +A+T +KI+T++KAA V +E YWP LFAK
Sbjct: 18  DEGIAITSDKIATLVKAAGVEIESYWPMLFAK 49


>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)
           similar to acidic ribosomal protein p1
          Length = 113

 Score = 46.8 bits (106), Expect = 9e-06
 Identities = 18/32 (56%), Positives = 26/32 (81%)
 Frame = +2

Query: 134 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAK 229
           D+ +A+T +KI+T++KAA V +E YWP LFAK
Sbjct: 18  DEGIAITSDKIATLVKAAGVEIESYWPMLFAK 49


>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)
           similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
           from [Arabidopsis thaliana]
          Length = 112

 Score = 46.8 bits (106), Expect = 9e-06
 Identities = 18/32 (56%), Positives = 26/32 (81%)
 Frame = +2

Query: 134 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAK 229
           D+ +A+T +KI+T++KAA V +E YWP LFAK
Sbjct: 18  DEGIAITADKIATLVKAAGVSIESYWPMLFAK 49


>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)
           similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
           from [Arabidopsis thaliana]
          Length = 112

 Score = 46.8 bits (106), Expect = 9e-06
 Identities = 18/32 (56%), Positives = 26/32 (81%)
 Frame = +2

Query: 134 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAK 229
           D+ +A+T +KI+T++KAA V +E YWP LFAK
Sbjct: 18  DEGIAITADKIATLVKAAGVSIESYWPMLFAK 49


>At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative
          Length = 111

 Score = 43.6 bits (98), Expect = 8e-05
 Identities = 18/32 (56%), Positives = 22/32 (68%)
 Frame = +2

Query: 134 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAK 229
           DD + +T E IS ++K A V VE YWP LFAK
Sbjct: 17  DDGIEITAENISKLVKTANVNVESYWPSLFAK 48


>At5g13690.1 68418.m01594 alpha-N-acetylglucosaminidase family /
           NAGLU family contains Pfam profile: PF05089
           alpha-N-acetylglucosaminidase (NAGLU)
          Length = 806

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +2

Query: 83  WCQKLNXHVF--TLLSSWLDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKAL 235
           W +  N H +   L  +WLDD + +  + +S +LK     V P + G    AL
Sbjct: 228 WARMGNLHAWGGPLSKNWLDDQLLLQKQILSRMLKFGMTPVLPSFSGNVPSAL 280


>At1g36920.1 68414.m04598 hypothetical protein
          Length = 221

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/51 (21%), Positives = 22/51 (43%)
 Frame = -3

Query: 272 DVGDQVTDIDALARLWRTDLANMALHXQPPLSRWWKFSHQLRQHHHQARMR 120
           D+GD + D+    +L     +N+      P+   WKF        H ++++
Sbjct: 23  DLGDSLIDVALWGKLAEDVYSNIKSQPSGPVFSSWKFDEDFAISRHSSKLK 73


>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
           [Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
           Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
          Length = 324

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 234 KALANRPGQYGSTXTAAAFKMVEIFSPVTATS 139
           +  +N P  + S  TAA  KM +I SP+T +S
Sbjct: 283 RGYSNNPSSFNSDFTAAMIKMGDI-SPLTGSS 313


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,272,234
Number of Sequences: 28952
Number of extensions: 132442
Number of successful extensions: 308
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)