Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_F06
         (481 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    25   0.36 
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   4.5  

>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 25.0 bits (52), Expect = 0.36
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 176 KFVTTFLPSLFEMRVSGVIIFTFXRFSSRYHSKKQEIRFC 57
           KFV +    LF+ R+ G++ FT  R  S++  +   +RFC
Sbjct: 10  KFVNSIRILLFQSRIFGLVTFTPDR--SKF--RPSSLRFC 45


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 407 SSIMIHSVQFFXSLNLKQAKDFCS 336
           SSIM+H +    SLN ++ K  CS
Sbjct: 255 SSIMMHHLVNPQSLNHQEVKAECS 278


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,146
Number of Sequences: 336
Number of extensions: 1911
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11247091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)