Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_F06
(481 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1006 + 8528508-8529285,8529376-8529544,8530179-8530445,853... 29 1.5
07_01_0766 - 5885207-5885791,5885874-5886224,5886252-5886269,588... 28 3.4
07_03_1010 - 23276442-23276681,23277022-23277267 27 6.0
07_03_0123 - 13688562-13689146,13689233-13689583,13689665-136898... 27 6.0
03_06_0596 + 34964109-34964189,34964286-34964481,34964567-349647... 27 6.0
03_06_0389 - 33567385-33567969,33568052-33568402,33568646-335688... 27 6.0
03_05_0923 + 28848925-28849272,28849636-28849869,28849965-288501... 27 6.0
03_06_0259 + 32712976-32714335,32714454-32714587,32714904-327151... 27 7.9
03_03_0041 - 14007687-14009381 27 7.9
>07_01_1006 + 8528508-8529285,8529376-8529544,8530179-8530445,
8530533-8530878,8530964-8531101,8531197-8531322,
8531422-8531634,8531721-8531863,8531891-8532009,
8532099-8532295,8532379-8532729,8532811-8533395
Length = 1143
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 188 WFLTKFVTTFLPSLFEMRVSGVIIFTFXR 102
WF++ F+ F+ + EMR SGV I + R
Sbjct: 957 WFMSLFICIFVTGILEMRWSGVAIDDWWR 985
>07_01_0766 -
5885207-5885791,5885874-5886224,5886252-5886269,
5886339-5886541,5886632-5886890,5887052-5887264,
5887357-5887482,5887590-5887727,5887817-5888162,
5888254-5888520,5888983-5889172,5889264-5889363,
5889444-5889694,5889990-5890182,5890313-5890336
Length = 1087
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 188 WFLTKFVTTFLPSLFEMRVSGVIIFTFXR 102
WF++ F++ F + EMR SGV I + R
Sbjct: 901 WFISLFISIFATGILEMRWSGVGIDEWWR 929
>07_03_1010 - 23276442-23276681,23277022-23277267
Length = 161
Score = 27.5 bits (58), Expect = 6.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 279 WTISTLSHHPSPASEE 326
W I T+ H PSPA +E
Sbjct: 122 WIIKTMKHEPSPAQDE 137
>07_03_0123 - 13688562-13689146,13689233-13689583,13689665-13689861,
13689954-13690072,13690103-13690245,13690332-13690544,
13690649-13690774,13690891-13691028,13691109-13691454,
13691532-13691798,13691939-13691983,13692148-13692349,
13692405-13692507,13692599-13692810,13692891-13693113,
13693211-13693291
Length = 1116
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 188 WFLTKFVTTFLPSLFEMRVSGVIIFTFXR 102
WF++ F+ F + EMR SGV I + R
Sbjct: 930 WFMSLFICIFATGILEMRWSGVGIDDWWR 958
>03_06_0596 +
34964109-34964189,34964286-34964481,34964567-34964775,
34964868-34964970,34965053-34965227,34965617-34965883,
34965966-34966311,34966396-34966533,34966645-34966770,
34966866-34967078,34967171-34967462,34967559-34967755,
34967844-34968194,34968290-34968874
Length = 1092
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 188 WFLTKFVTTFLPSLFEMRVSGVIIFTFXR 102
WF++ F+ F + EMR SGV I + R
Sbjct: 906 WFMSLFICIFATGILEMRWSGVGIDDWWR 934
>03_06_0389 -
33567385-33567969,33568052-33568402,33568646-33568848,
33569044-33569299,33569459-33569671,33569757-33569882,
33569965-33570102,33570191-33570536,33570630-33570896,
33571192-33571378,33571457-33571556,33571659-33571909,
33572242-33572428,33572562-33572573
Length = 1073
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 188 WFLTKFVTTFLPSLFEMRVSGVIIFTFXR 102
WF++ F++ F + EMR SGV I + R
Sbjct: 887 WFISLFLSIFATGILEMRWSGVGIDEWWR 915
>03_05_0923 +
28848925-28849272,28849636-28849869,28849965-28850131,
28850433-28850651,28850743-28850929,28851012-28851063,
28851158-28851387,28851619-28851717,28851835-28852565,
28853004-28853519,28854140-28854398
Length = 1013
Score = 27.5 bits (58), Expect = 6.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 279 WTISTLSHHPSPASEE 326
W I T+ H PSPA +E
Sbjct: 156 WIIKTMKHEPSPAQDE 171
>03_06_0259 +
32712976-32714335,32714454-32714587,32714904-32715144,
32715254-32715462,32715522-32715583,32715690-32715801,
32715916-32716208,32716400-32716520
Length = 843
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 151 LGRNVVTNFV-RNHSNGGIPGENLPFDIHNR 240
LGR VVT + RN GG+PGE F + R
Sbjct: 244 LGRKVVTVVLSRNRFTGGLPGEITSFYLLER 274
>03_03_0041 - 14007687-14009381
Length = 564
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 240 LQADIVFHPICGLWTISTLSHHPSPA 317
L D++FHP C T+S L P P+
Sbjct: 59 LPGDLLFHPACVRLTLSHLLPSPDPS 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,407,685
Number of Sequences: 37544
Number of extensions: 197017
Number of successful extensions: 404
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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