Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_F04
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    46   5e-06
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    43   3e-05
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    43   4e-05
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po...    43   4e-05
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    40   4e-04
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb...    34   0.016
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    29   0.77 
SPBC36.10 |||mitochondrial intermembrane space protein sorting p...    25   7.2  

>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 46.0 bits (104), Expect = 5e-06
 Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 3/148 (2%)
 Frame = +3

Query: 135 KLAGRTLFITGASRXXXXXXXXXXXXXXX-NVVIAAKTAEPHPKLPGTIYTAAEEIEA-L 308
           +L G+T+ ITGAS                  +++AA+          T+   A+E+E+  
Sbjct: 3   RLDGKTILITGASSGIGKSTAFEIAKVAKVKLILAARRFS-------TVEEIAKELESKY 55

Query: 309 GGKALPCIVDVRDXKQVQKAVDEAVKKFNGIDILVNNAS-AISLTGTAQTDMKRYDLMHN 485
               LP  +DV D K +   ++   K+F  ID+L+NNA  A+        ++     M  
Sbjct: 56  EVSVLPLKLDVSDLKSIPGVIESLPKEFADIDVLINNAGLALGTDKVIDLNIDDAVTMIT 115

Query: 486 INTRGTFLASXICLPVLKNSNHAHILNL 569
            N  G    +   LP+  + N   ILN+
Sbjct: 116 TNVLGMMAMTRAVLPIFYSKNKGDILNV 143


>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
 Frame = +3

Query: 318 ALPCIVDVRDXKQVQKAVDEAVKKFNGIDILVNNASAISLTGTAQTDMKRYDLMHNINTR 497
           AL    DV    Q++ A+++ ++    ID+L+NNA     T   Q   + +D   ++  R
Sbjct: 47  ALALQADVSKADQIETAIEKVIQTLGPIDVLINNAGLADDTPFEQLSHESWDHDVSLVLR 106

Query: 498 GTFLASXICLP-VLKNSNHAHILNLSPPLNMNPYWFSIHVAYTMAKYGM 641
           G +L     +P + K      I+N+    ++N + +    AY+ AK G+
Sbjct: 107 GNYLTQRYVIPHMAKQGKGGSIVNIG---SVNGHIYLGSPAYSAAKAGL 152


>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 20/80 (25%), Positives = 41/80 (51%)
 Frame = +3

Query: 333 VDVRDXKQVQKAVDEAVKKFNGIDILVNNASAISLTGTAQTDMKRYDLMHNINTRGTFLA 512
           +DV +   ++K+V++A+  F  ID+L+NNA     +    T  ++   + N N  G    
Sbjct: 21  LDVNNFSSIKKSVEKAISHFGRIDVLLNNAGYSVYSPLESTTEEQIHNIFNTNVFGALEV 80

Query: 513 SXICLPVLKNSNHAHILNLS 572
                P+ ++ ++  I+N+S
Sbjct: 81  IKAITPIFRSQHNGMIINVS 100


>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 236

 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 20/80 (25%), Positives = 41/80 (51%)
 Frame = +3

Query: 333 VDVRDXKQVQKAVDEAVKKFNGIDILVNNASAISLTGTAQTDMKRYDLMHNINTRGTFLA 512
           +DV +   ++K+V++A+  F  ID+L+NNA     +    T  ++   + N N  G    
Sbjct: 21  LDVNNFSSIKKSVEKAISHFGRIDVLLNNAGYSVYSPLESTTEEQIHNIFNTNVFGALEV 80

Query: 513 SXICLPVLKNSNHAHILNLS 572
                P+ ++ ++  I+N+S
Sbjct: 81  IKAITPIFRSQHNGMIINVS 100


>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 292

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 3/126 (2%)
 Frame = +3

Query: 285 AAEEIEALGGKALPCIVDVRDXKQVQKAVDEAVKKFNGIDILVNNASAISLTGTAQT-DM 461
           A + I     K L   +DV D K V+ A  +A ++F  +DI++NNA    L G  ++ ++
Sbjct: 38  APDTITIEHSKLLKLKLDVTDVKSVETAFKDAKRRFGNVDIVINNA-GYGLVGEFESYNI 96

Query: 462 KRYDLMHNINTRGTFLASXICLPVLKNSNH-AHILNLSPPLNMNPY-WFSIHVAYTMAKY 635
           +      N+N  G    +   L +++ S     IL +S      P    S++ A   A  
Sbjct: 97  EEMHRQMNVNFWGVAYITKEALNLMRESGKGGRILQISSVAGYYPSPCLSMYNASKFAVE 156

Query: 636 GMSMCV 653
           G+S  +
Sbjct: 157 GLSQTI 162


>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 339

 Score = 34.3 bits (75), Expect = 0.016
 Identities = 31/136 (22%), Positives = 54/136 (39%)
 Frame = +3

Query: 138 LAGRTLFITGASRXXXXXXXXXXXXXXXNVVIAAKTAEPHPKLPGTIYTAAEEIEALGGK 317
           L G+   +TG+S                 V +A +  E + K+   I+      E    K
Sbjct: 40  LTGKVALVTGSSGGIGYVTALELARKGAKVYLAGRNEEKYQKVMKQIHD-----EVRHSK 94

Query: 318 ALPCIVDVRDXKQVQKAVDEAVKKFNGIDILVNNASAISLTGTAQTDMKRYDLMHNINTR 497
                +D+ D + V +A +  + K   + ILVNNA  ++       D   Y+L    N  
Sbjct: 95  IRFLRLDLLDFESVYQAAESFIAKEEKLHILVNNAGIMNPPFELTKD--GYELQIQTNYL 152

Query: 498 GTFLASXICLPVLKNS 545
             +L + + LP L+ +
Sbjct: 153 SHYLFTELLLPTLRRT 168


>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 369 VDEAVKKFNGIDILVNNASAISLTGTAQ-TDMKRYDLMHNINTRGTFLASXICLPVLKNS 545
           VD A+KK   ID+LVNN +   +  + +  D +++DL    N    F  +   +  +K+ 
Sbjct: 112 VDFALKKLGWIDVLVNNIAYQQVAQSIEDIDDEQWDLTFKTNIFSFFWVTKAAISHMKSG 171

Query: 546 N 548
           +
Sbjct: 172 S 172


>SPBC36.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 243 TAEPHPKLPGTIYTAAEEIEAL 308
           T  PHP+L  T++     IEAL
Sbjct: 110 TYSPHPELEATVFQQEARIEAL 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,366,259
Number of Sequences: 5004
Number of extensions: 42970
Number of successful extensions: 87
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)