Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_F02
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c... 30 0.24
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce... 27 2.3
SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr 1||... 27 3.0
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 26 4.0
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 26 5.2
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 26 5.2
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 26 5.2
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 6.9
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 25 6.9
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 25 9.1
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 25 9.1
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 9.1
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 25 9.1
>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 30.3 bits (65), Expect = 0.24
Identities = 17/70 (24%), Positives = 26/70 (37%)
Frame = -3
Query: 233 FVVIYFVGISFSFDHFTFQIVNVVKDVIAVDRLLGKVGCREAIVRFFYLRQRRFEFELCH 54
F V+ + D + + V + +G G R +FY RQ ++ F L
Sbjct: 174 FPVLLLIPTRLGIDSINESYYDQLLQVFEIRSFVGITGGRPRSAHYFYARQNQYFFYLDP 233
Query: 53 PATRFXHDRT 24
T F H T
Sbjct: 234 HCTHFAHTTT 243
>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 372 EENVEKLAPVQVRSQEEIMNECQMWWTITGNFGNILP 482
++N EK++ +Q +EE+ N TGNF + P
Sbjct: 77 QQNPEKISTLQQVKEEEVSNTFSAPLNATGNFSSANP 113
>SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 247
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +3
Query: 477 LPIDWTKSFSRKMHIPTLNLSDTKNSLTPDDXIHSSQXEAVASDLDMHAL 626
+P D T +FS + + T N LTP + + + SD++M A+
Sbjct: 94 IPADGTSAFSANPQV-----ASTNNKLTPLPSLQKTTSSSEGSDIEMEAM 138
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 287 IPFAVLHVVLFTLHQXRFFVVIYFVGISFSFDHFTFQIV 171
IPF V+ + LF++ +F +YF+ F F F F I+
Sbjct: 496 IPFLVILIELFSILDSLWFHPLYFM---FGFSFFCFGIL 531
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 234 EPXLVKCKQD-NMQNGEGDNFTETFSGSLEDLVNTFDEKIT 353
E L +C + N+ + + NF F S + L+N D +I+
Sbjct: 311 EHLLSECSHEINVLSQQSKNFNGVFESSYQPLINDLDHQIS 351
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 392 QLLDVLLIVSETFRDFLIEGVHQIFKRTGESLSEIIPFAV 273
+L+++ F D LI G +IF S + +IPFA+
Sbjct: 1055 RLINLTQTSQRMFHDALISGFFKIFSAAVVSATLLIPFAL 1094
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/47 (23%), Positives = 23/47 (48%)
Frame = +3
Query: 372 EENVEKLAPVQVRSQEEIMNECQMWWTITGNFGNILPIDWTKSFSRK 512
E ++ PV+V+ + EC ++W I + L +D+ + +K
Sbjct: 355 EYRLQVTDPVEVKQINTFIRECSIYWRILPSTRCALSMDFAREHLQK 401
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3
Query: 284 PFAVLHVVLFTLHQXRFFVVIYFVGISFSFDHFTF 180
PF + LF FF +++F+ SFSF F
Sbjct: 104 PFTGSELSLFRCLLLFFFFLLFFLSFSFSFSFLFF 138
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.4 bits (53), Expect = 6.9
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +3
Query: 180 KCEMIKTKTDSNKINDNEEPXLVKCKQDNMQNGEGDNFTETFSGSLEDLVNTFD 341
K K +S N ++ + K++ + +G+ T+T ED+V TFD
Sbjct: 351 KLSEAKENLESIVTNQSDIDGKISSKEEVIGRAKGE--TDTTKSKFEDIVKTFD 402
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 364 PKHFVIFSSKVFTKSSREPEKVSVKLSPSPF 272
PKH V + VFT+ SR +VKL F
Sbjct: 444 PKHQVDLENYVFTEGSRLMSNKAVKLPEGSF 474
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 25.0 bits (52), Expect = 9.1
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +3
Query: 369 YEENVEKLAPVQVRSQEEIMNECQMWWTI-TGNFGNILPIDWTK-SFSRKMHIPTLNLSD 542
++++V L + +I N C++ T FG + +D+ + + S HIP ++LS
Sbjct: 403 WDDDVSALQSILDNKVSKIENGCRVRIDYPTSEFGELF-VDFRRPARSYPAHIPLMSLSS 461
Query: 543 TK 548
TK
Sbjct: 462 TK 463
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.0 bits (52), Expect = 9.1
Identities = 20/96 (20%), Positives = 34/96 (35%)
Frame = -1
Query: 616 MSKSEATASXCELWXSSSGVNEFFVSLKFNVGICIFLEKDLVQSIGKMFPKLPVIVHHIW 437
M S+ L S+S + E+ FN +C F + ++ IG + L H
Sbjct: 2397 MLVSDFVLPVLSLQFSNSKIAEYLWRDFFNASVCSFTKDEIPLCIGSIISFLSREYHIRL 2456
Query: 436 HSFMISSCERTCTGAXXXXXXXXFPKHFVIFSSKVF 329
+ E T P H +++ SK +
Sbjct: 2457 LGKTPNVLETILTSIVSSDMPIPLPPHLLVYLSKTY 2492
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -3
Query: 323 IFKRTGESLSEIIPFAVLHVVLFTLHQXRFFVVIYFV 213
I +RT + LS+ +P HVV L + + + +F+
Sbjct: 506 IIRRTNDILSKYLPVKYEHVVFCNLSEFQLSLYKHFI 542
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,302,739
Number of Sequences: 5004
Number of extensions: 43726
Number of successful extensions: 189
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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