Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_F02
         (637 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50400.1 68418.m06242 calcineurin-like phosphoesterase family...    31   0.85 
At4g35710.1 68417.m05068 hypothetical protein contains Pfam prof...    30   1.1  
At4g37250.1 68417.m05273 leucine-rich repeat family protein / pr...    28   4.5  
At4g19330.1 68417.m02848 kelch repeat-containing F-box family pr...    28   4.5  
At1g60410.1 68414.m06801 F-box family protein contains F-box dom...    28   4.5  
At5g28400.1 68418.m03448 expressed protein                             27   7.9  
At1g14560.1 68414.m01731 mitochondrial substrate carrier family ...    27   7.9  

>At5g50400.1 68418.m06242 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 611

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +3

Query: 366 NYEENVEKLAPVQVR-SQEEIMNECQMWWTITGNFGNILP-IDWTKSFSRKMHIPTLNLS 539
           N+   +   APV  R +  +  +E  + WT   N G  +P ++W++  +R    P   L+
Sbjct: 158 NHVSFINPKAPVYPRLALGKKWDEMTVTWTSGYNIGEAVPFVEWSRKGTRSRRSPAGTLT 217

Query: 540 DTKNSL 557
            T+NS+
Sbjct: 218 FTRNSM 223


>At4g35710.1 68417.m05068 hypothetical protein contains Pfam profile
           PF03087: Arabidopsis protein of unknown function
          Length = 283

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
 Frame = +3

Query: 243 LVKCKQDNMQNGEGDNFTETFSGSL-------EDLVNTFDEKITKCFGNYEENVEKLAPV 401
           ++K K+DN  +    N  ET   ++       +DL N  +E +  C G +E N+E L   
Sbjct: 213 VLKMKKDN--HAPAKNVLETLDSAIFGDFLSHDDLQNELEE-VEMCIGGFERNLEGLFRR 269

Query: 402 QVRSQEEIMN 431
            +R++  I+N
Sbjct: 270 LIRTRASILN 279


>At4g37250.1 68417.m05273 leucine-rich repeat family protein /
           protein kinase family protein contains protein kinase
           domain, Pfam:PF00069; contains leucine-rich repeats,
           Pfam:PF00560
          Length = 768

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -1

Query: 349 IFSSKVFTKSSREPEKVSVKLSPSP 275
           IFSSK +T SSRE   +    SPSP
Sbjct: 617 IFSSKRYTTSSREFSSIGPTPSPSP 641


>At4g19330.1 68417.m02848 kelch repeat-containing F-box family
           protein very low similarity to SKP1 interacting partner
           6 [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 537

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 432 ECQMWWTITGNFGNILPIDWTKSFSR 509
           +C+ W  + GN+G  L + W ++ SR
Sbjct: 439 KCEEWRLVKGNYGGKLVVFWDRAVSR 464


>At1g60410.1 68414.m06801 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 406

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 310 PEKVSVKLSPSPFCMLSCLHF 248
           PE   +KLSP P C+LS L F
Sbjct: 353 PEMEEIKLSPVPQCVLSSLDF 373


>At5g28400.1 68418.m03448 expressed protein
          Length = 996

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 6/110 (5%)
 Frame = +3

Query: 303 FSGSLEDLVNTFDEKITKCFGNYEENVEKLAP----VQVRSQEEIMNEC--QMWWTITGN 464
           F  SLE  V   +EK++     Y+  +EK+ P      +    E +N    Q     +G 
Sbjct: 650 FLQSLEKKVEKENEKLSHLHHVYDP-LEKIIPRWKGPSLDKNPEFLNNYHEQREALFSGK 708

Query: 465 FGNILPIDWTKSFSRKMHIPTLNLSDTKNSLTPDDXIHSSQXEAVASDLD 614
             ++ P+ + +  S   H      + ++N+LTP   I SSQ + V    D
Sbjct: 709 AASVSPVKYEEQSS---HQELSESASSENTLTPSSEITSSQPKIVVEGSD 755


>At1g14560.1 68414.m01731 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 331

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -3

Query: 368 VSETFRDFL-IEGVHQIFKRTGESLSEIIPFAVLHVVLFTLHQ 243
           VS++ +  L  +G    +K  G S+  IIP+A LH + + +++
Sbjct: 63  VSQSLKKVLQFDGPLGFYKGNGASVIRIIPYAALHYMTYEVYR 105


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,149,863
Number of Sequences: 28952
Number of extensions: 232431
Number of successful extensions: 707
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)