Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_E24
         (649 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4VDS6 Cluster: Putative uncharacterized protein; n=1; ...    34   3.4  
UniRef50_A2G4B9 Cluster: Ankyrin repeat protein, putative; n=1; ...    33   4.5  

>UniRef50_A4VDS6 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 239

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 14/28 (50%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
 Frame = +1

Query: 406 VIIYFKINH-KNLFYSFKLVSFYWFLKI 486
           V +YFK+ H KNLF+ FKL++F ++ +I
Sbjct: 110 VFLYFKVIHSKNLFFFFKLINFLFYSEI 137


>UniRef50_A2G4B9 Cluster: Ankyrin repeat protein, putative; n=1;
           Trichomonas vaginalis G3|Rep: Ankyrin repeat protein,
           putative - Trichomonas vaginalis G3
          Length = 239

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 486 NNMALFYEYFTITTIINYLYLYNPMIILSSIINFYI 593
           NN+  F  YF IT  IN  ++Y+P   L S+  ++I
Sbjct: 47  NNLHAFLVYFDITNDINNCFVYSPCFHLQSLCEYFI 82


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 518,557,994
Number of Sequences: 1657284
Number of extensions: 8910771
Number of successful extensions: 17868
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17862
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)