Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_E24
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    26   5.4  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   7.1  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    25   7.1  

>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 474 VPKNNNMALFYEYFTITTIINYLYLYNPMIILSSIINFY 590
           +PKNN   +  +   +TT+   + L  P+I+   + NFY
Sbjct: 280 IPKNNLKEVLKKCKFVTTMGFRMMLTEPIILSMGLYNFY 318


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 34  NEDDPATYYFYKVYNGP 84
           N + P T YF+K+Y+ P
Sbjct: 390 NPEMPTTIYFWKIYSAP 406


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -3

Query: 281 YNLFMLFSAVTSDKLSREFRYRLR 210
           +N  +LFS++T    SR ++YR++
Sbjct: 163 FNSSILFSSITKINFSRGYKYRIQ 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,268,755
Number of Sequences: 5004
Number of extensions: 40348
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)