Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_E24
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0439 + 3409422-3409795,3410672-3410897,3411004-3411282,341...    27   9.7  

>03_01_0439 +
           3409422-3409795,3410672-3410897,3411004-3411282,
           3411374-3411550,3411653-3411706,3411806-3411954,
           3412534-3412597,3412670-3412840,3412922-3413059,
           3413180-3413215
          Length = 555

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +3

Query: 99  PNGYSSPSHHSYTMFTLSDNSM*HVV*DSRFAVILFTAEA 218
           PNG SS   + Y +FT+   S    V  SRFA  L+ A A
Sbjct: 67  PNGASSEGEYDYDLFTIGAGS--GGVRASRFASTLYGARA 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,898,484
Number of Sequences: 37544
Number of extensions: 208081
Number of successful extensions: 338
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)