Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_E22
(649 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 254 3e-68
Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical pr... 31 0.93
AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical... 31 0.93
AF003140-7|AAB54170.2| 333|Caenorhabditis elegans Hypothetical ... 29 2.8
Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical pr... 28 6.6
U58753-9|AAC24441.2| 441|Caenorhabditis elegans Seryl trna synt... 28 6.6
AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear recep... 28 6.6
AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormo... 28 6.6
AB016796-1|BAA74732.1| 441|Caenorhabditis elegans Seryl-tRNA sy... 28 6.6
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 254 bits (623), Expect = 3e-68
Identities = 125/156 (80%), Positives = 132/156 (84%)
Frame = +3
Query: 180 EDXKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQK 359
E EW PVTKLGRLV+E KI LE IYL SLPIKEFEIID L +L DEVLKI PVQK
Sbjct: 52 EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDA-LCSNLKDEVLKISPVQK 110
Query: 360 QTRAGQRTRFXAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRXGYWGNKI 539
QT AGQRTRF AFVAIGD+ GH+GLGVKCSKEVATAIRGAI+ AKL+V+PVR GYWGNKI
Sbjct: 111 QTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKI 170
Query: 540 GKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPXP 647
G PHTVPCKVTGKC SV VRLIPAPRGTGIVSAP P
Sbjct: 171 GLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVP 206
>Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 30.7 bits (66), Expect = 0.93
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -1
Query: 385 RVRCPARVCFCTGMILRTSSFRD-GPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSL 209
R R P + T R+SS R P S +S + + + S+FPSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581
Query: 208 VTGT 197
+ T
Sbjct: 582 QSNT 585
>AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 30.7 bits (66), Expect = 0.93
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -1
Query: 385 RVRCPARVCFCTGMILRTSSFRD-GPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSL 209
R R P + T R+SS R P S +S + + + S+FPSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581
Query: 208 VTGT 197
+ T
Sbjct: 582 QSNT 585
>AF003140-7|AAB54170.2| 333|Caenorhabditis elegans Hypothetical
protein C44E4.2 protein.
Length = 333
Score = 29.1 bits (62), Expect = 2.8
Identities = 9/38 (23%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Frame = +3
Query: 15 LTRLSEPIVQ-QWRTLLQPVDVAVFAADSDHAVEIEAV 125
+T ++E ++ QWR +++ +D++ F++ S + V ++++
Sbjct: 76 MTSITEGAIEPQWRIMMESIDISKFSSTSSNFVHMDSI 113
>Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical
protein T01E8.3 protein.
Length = 1299
Score = 27.9 bits (59), Expect = 6.6
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -3
Query: 350 RHDLKNLIIQGRAEEEINDLEFFD-W*RKQVNALEFVDFSFANKAAEFGDRN-PLFXVF 180
+H+ K L++ + D + FD + ALEF++ F A FGDRN P VF
Sbjct: 220 KHERKGLVVTFQNFLRFLDGKQFDELASNRTRALEFLNRYFQEDQAYFGDRNEPSMTVF 278
>U58753-9|AAC24441.2| 441|Caenorhabditis elegans Seryl trna
synthetase protein 1 protein.
Length = 441
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 12 CLTRLSEPIVQQWRTLLQPVDVA 80
CLT +E +VQ WR+LL P D +
Sbjct: 146 CLT--AEKLVQTWRSLLHPTDAS 166
>AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear receptor
NHR-121 protein.
Length = 461
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +2
Query: 350 CTETNTCRTAHTFQXICCHWRQQRSYWFGCE--VQQGSRHCHSRR 478
CT NTCR + + IC R + G E Q R C++ R
Sbjct: 58 CTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 121 protein.
Length = 461
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +2
Query: 350 CTETNTCRTAHTFQXICCHWRQQRSYWFGCE--VQQGSRHCHSRR 478
CT NTCR + + IC R + G E Q R C++ R
Sbjct: 58 CTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>AB016796-1|BAA74732.1| 441|Caenorhabditis elegans Seryl-tRNA
synthetase protein.
Length = 441
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 12 CLTRLSEPIVQQWRTLLQPVDVA 80
CLT +E +VQ WR+LL P D +
Sbjct: 146 CLT--AEKLVQTWRSLLHPTDAS 166
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,770,630
Number of Sequences: 27780
Number of extensions: 277315
Number of successful extensions: 745
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -