Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_E22
(649 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 277 3e-75
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 271 2e-73
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 271 2e-73
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 271 2e-73
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 271 2e-73
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 269 9e-73
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 57 9e-09
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 4.7
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 28 4.7
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 6.1
At4g03740.1 68417.m00513 hypothetical protein 27 8.1
At3g61590.1 68416.m06898 F-box family protein contains weak hit ... 27 8.1
At3g01450.1 68416.m00069 expressed protein 27 8.1
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 277 bits (680), Expect = 3e-75
Identities = 123/155 (79%), Positives = 143/155 (92%)
Frame = +3
Query: 183 DXKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 362
+ ++WVPVTKLGRLV+EGKI K+E IYL SLP+KE++IID +GPSL DEV+KIMPVQKQ
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQ 100
Query: 363 TRAGQRTRFXAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRXGYWGNKIG 542
TRAGQRTRF AF+ +GD+NGH+GLGVKCSKEVATAIRGAIILAKLSV+P+R GYWGNKIG
Sbjct: 101 TRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIG 160
Query: 543 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPXP 647
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A P
Sbjct: 161 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVP 195
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 271 bits (665), Expect = 2e-73
Identities = 123/152 (80%), Positives = 138/152 (90%)
Frame = +3
Query: 192 EWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRA 371
+WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQTRA
Sbjct: 52 KWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRA 111
Query: 372 GQRTRFXAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRXGYWGNKIGKPH 551
GQRTRF AFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVR GYWGNKIGKPH
Sbjct: 112 GQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPH 171
Query: 552 TVPCKVTGKCGSVTVRLIPAPRGTGIVSAPXP 647
TVPCKVTGKCGSVTVR++PAPRG+GIV+A P
Sbjct: 172 TVPCKVTGKCGSVTVRMVPAPRGSGIVAARVP 203
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 271 bits (665), Expect = 2e-73
Identities = 123/152 (80%), Positives = 138/152 (90%)
Frame = +3
Query: 192 EWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRA 371
+WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQTRA
Sbjct: 52 KWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRA 111
Query: 372 GQRTRFXAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRXGYWGNKIGKPH 551
GQRTRF AFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVR GYWGNKIGKPH
Sbjct: 112 GQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPH 171
Query: 552 TVPCKVTGKCGSVTVRLIPAPRGTGIVSAPXP 647
TVPCKVTGKCGSVTVR++PAPRG+GIV+A P
Sbjct: 172 TVPCKVTGKCGSVTVRMVPAPRGSGIVAARVP 203
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 271 bits (665), Expect = 2e-73
Identities = 123/152 (80%), Positives = 138/152 (90%)
Frame = +3
Query: 192 EWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRA 371
+WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQTRA
Sbjct: 52 KWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRA 111
Query: 372 GQRTRFXAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRXGYWGNKIGKPH 551
GQRTRF AFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVR GYWGNKIGKPH
Sbjct: 112 GQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPH 171
Query: 552 TVPCKVTGKCGSVTVRLIPAPRGTGIVSAPXP 647
TVPCKVTGKCGSVTVR++PAPRG+GIV+A P
Sbjct: 172 TVPCKVTGKCGSVTVRMVPAPRGSGIVAARVP 203
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 271 bits (665), Expect = 2e-73
Identities = 123/152 (80%), Positives = 138/152 (90%)
Frame = +3
Query: 192 EWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRA 371
+WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQTRA
Sbjct: 52 KWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRA 111
Query: 372 GQRTRFXAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRXGYWGNKIGKPH 551
GQRTRF AFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVR GYWGNKIGKPH
Sbjct: 112 GQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPH 171
Query: 552 TVPCKVTGKCGSVTVRLIPAPRGTGIVSAPXP 647
TVPCKVTGKCGSVTVR++PAPRG+GIV+A P
Sbjct: 172 TVPCKVTGKCGSVTVRMVPAPRGSGIVAARVP 203
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 269 bits (660), Expect = 9e-73
Identities = 121/155 (78%), Positives = 139/155 (89%)
Frame = +3
Query: 183 DXKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 362
+ ++WVPVTKLGRLV G I ++E IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQ 109
Query: 363 TRAGQRTRFXAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRXGYWGNKIG 542
TRAGQRTRF AFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVR GYWGNKIG
Sbjct: 110 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 169
Query: 543 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPXP 647
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A P
Sbjct: 170 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVP 204
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 57.2 bits (132), Expect = 9e-09
Identities = 31/103 (30%), Positives = 57/103 (55%)
Frame = +3
Query: 327 DEVLKIMPVQKQTRAGQRTRFXAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 506
+ V+++ V K + G++ +F A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 507 PVRXGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVS 635
V + K T P + G G+ V L PA GTG+++
Sbjct: 209 QV-------PMTKYSTFPHRSEGDYGAAKVMLRPASPGTGVIA 244
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 393 AFVAIGDNNGHIGLGVKCSKE 455
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -1
Query: 478 APRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCFCTGMILRTSSFR 320
A A+ H +P + P L P N R+R A CF +G + R + R
Sbjct: 184 AAERALVAMTTHVSPALLLPKLRPCLKNKSPRIRAKASACF-SGCVPRLEAAR 235
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +3
Query: 549 HTVPCKVTGKCGSVTVRL 602
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
>At4g03740.1 68417.m00513 hypothetical protein
Length = 345
Score = 27.5 bits (58), Expect = 8.1
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2
Query: 563 QGHRQVWFRNSPADSCPSWYWYC 631
+ ++++WFR SCP W C
Sbjct: 60 RNNQEIWFRTFALGSCPHTLWPC 82
>At3g61590.1 68416.m06898 F-box family protein contains weak hit to
Pfam PF00646: F-box domain; stamina pistilloidia (Stp) -
Pisum sativum, EMBL:AF004843
Length = 411
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 24 LSEPIVQQWRTLLQP 68
+S PI +QWRTL++P
Sbjct: 150 VSNPITKQWRTLIEP 164
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = -1
Query: 478 APRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 356
A A+ H +P + P L P N R+R A CF
Sbjct: 184 AAEKALVAMTAHVSPALLLPKLQPFLKNRNPRIRAKASTCF 224
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,074,941
Number of Sequences: 28952
Number of extensions: 262992
Number of successful extensions: 683
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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