Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_E21
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.8  
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    25   8.4  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    25   8.4  

>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 268 NEMSRVDVVQPNVPGNGDDQYPVREVHAPNPPREKN 375
           N+   V++    +P       PV  V AP+PPR  N
Sbjct: 219 NDTGSVELSNLYMPSPPSSALPVSLVSAPSPPRATN 254


>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 292 VQPNVPGNGDDQYPVREVHAPNPPREKNAQDLKG 393
           V PNV      ++  R++H     R++  +D+KG
Sbjct: 21  VHPNVDKKSFIRWRQRDIHEKRAVRKQKMEDIKG 54


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +2

Query: 344 STPQIHQEKKTRK--I*KASFETTIASKE--IA*ATQNSKSKREQGSGAVSD 487
           S P +HQ + TRK    KA   TT  SK       T  S+S + +G    SD
Sbjct: 142 SKPVVHQTRATRKPAQPKAEKSTTSKSKSHTTTATTHTSRSSKSKGLPRFSD 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.127    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,234,292
Number of Sequences: 5004
Number of extensions: 17545
Number of successful extensions: 46
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)