Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_E21
         (501 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0190 + 20777647-20777823,20778219-20778383                       28   3.7  
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249...    28   4.8  
06_03_0854 + 25400855-25403741,25406174-25407708                       28   4.8  
04_04_0231 - 23790745-23791131,23791207-23792382                       28   4.8  
04_03_0704 + 18872899-18874191                                         27   6.4  

>02_04_0190 + 20777647-20777823,20778219-20778383
          Length = 113

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 238 GGGERPHLAANEMSRVDVVQPNVPGNGDD 324
           G G   H+  N++ +  VV+PN+P   DD
Sbjct: 67  GCGRVHHIIENDLDKCRVVEPNLPRKTDD 95


>11_06_0767 +
           27121761-27123335,27123701-27123910,27124843-27124911,
           27125387-27125656,27126027-27126377,27126480-27126757,
           27126887-27128330
          Length = 1398

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 295 QPNVPGNGDDQYPVREVHAPNPPREKN 375
           QPN+PG G   YP +     + P E N
Sbjct: 413 QPNIPGAGGPSYPAKHHLGGSSPGEAN 439


>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 19/47 (40%), Positives = 21/47 (44%)
 Frame = +1

Query: 238  GGGERPHLAANEMSRVDVVQPNVPGNGDDQYPVREVHAPNPPREKNA 378
            GGG R        + V VV P +P       P   VHAP PP E NA
Sbjct: 997  GGGGRGRGGKCAPTAVTVVAPPLP------VPTPAVHAPAPPVEPNA 1037


>04_04_0231 - 23790745-23791131,23791207-23792382
          Length = 520

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 318 AVSGHVRLNDVDAAHFVCREMWT 250
           A +G +RL  +DA+H V  EMW+
Sbjct: 127 AFNGLLRLGHLDASHAVLEEMWS 149


>04_03_0704 + 18872899-18874191
          Length = 430

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 7   SPPHSLTGASVAAAKAHVSLSRRPPQEV 90
           SP H+ T A+ AAA A + L    P+E+
Sbjct: 106 SPEHTATDAAAAAATAELMLEATCPEEI 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.310    0.127    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,278,865
Number of Sequences: 37544
Number of extensions: 173285
Number of successful extensions: 392
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)