Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_E21
         (501 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_7846| Best HMM Match : CoCoA (HMM E-Value=0.00016)                  27   6.6  
SB_326| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   8.7  

>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 766

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +1

Query: 283 VDVVQPNVPGNGD--DQYPVREVHAPNPPREKNA 378
           ++   P VPG G   D  PV+    P PPR+K A
Sbjct: 712 IETTTPMVPGKGGGLDFDPVQNREKPPPPRDKTA 745


>SB_7846| Best HMM Match : CoCoA (HMM E-Value=0.00016)
          Length = 1284

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 311 ETATISIRFEKSTPQIHQEKKTRKI*KASFETTIASK-EIA*ATQNSKSKREQ 466
           E+  +SI  E+ T  +H+EK+ ++  +   E    SK E+    +N+  K E+
Sbjct: 578 ESRALSICLEEKTRNLHEEKRRKEELEKKIEEMETSKNELLVMLENANKKTEE 630


>SB_326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 528

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 426 ISFEAIVVSKLAFQILRVFFSWWIWGVDFSNRILIVAVS 310
           + F   +V+ L      + F   +WGVD   RILI  V+
Sbjct: 208 VLFILAIVAALLHDSAGILFGVGVWGVDLILRILIAVVN 246


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.310    0.127    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,059,552
Number of Sequences: 59808
Number of extensions: 147374
Number of successful extensions: 282
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)